RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 JPH2Q9BR39 696 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HOMER3Q9NSC5 361 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 NINJ2Q9NZG7 142 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 GAPVD1Q14C86 1478 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 AKNAQ7Z591 1439 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ADAMTS12P58397 1594 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 BICDL2A1A5D9 508 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 FBP2O00757 339 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 SNAP91O60641 907 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 SYNGR4O95473 234 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 MT-ATP6P00846 226 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 APRTP07741 180 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ETS1P14921 441 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ACP1P24666 158 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 MTIF2P46199 727 aaKnown RBP3.88□□□□□ -1.79
LINC00560-201ENST00000564593 LY6DQ14210 128 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 GAMTQ14353 236 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 DDI2Q5TDH0 399 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 BNIPLQ7Z465 357 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 FAM131BQ86XD5 332 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 HDDC3Q8N4P3 179 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 MRPL43Q8N983 215 aaKnown RBP3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ICA1LQ8NDH6 482 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 LRRC15Q8TF66 581 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 COG3Q96JB2 828 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 SLC45A3Q96JT2 553 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF599Q96NL3 588 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 ANKRD27Q96NW4 1050 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 STRADBQ9C0K7 418 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 C1orf21Q9H246 121 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 SLC25A19Q9HC21 320 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 SPASTQ9UBP0 616 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 MUTYHQ9UIF7 546 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 HOOK1Q9UJC3 728 aaKnown RBP3.88□□□□□ -1.79
LINC00560-201ENST00000564593 NIP7Q9Y221 180 aaKnown RBP eCLIP3.88□□□□□ -1.79
LINC00560-201ENST00000564593 NUDCQ9Y266 331 aa3.88□□□□□ -1.79
LINC00560-201ENST00000564593 TARBP1Q13395 1621 aaKnown RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 MTUS2Q5JR59 1369 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 SNAPC4Q5SXM2 1469 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 A0A0U1RRA0 63 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 LOC390937A0A1W2PQ73 354 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 IGLON5A6NGN9 336 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF724A8MTY0 619 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ARHGEF33A8MVX0 844 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 PDHXO00330 501 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 LRP3O75074 770 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 POP4O95707 220 aaKnown RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 CXCL10P02778 98 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 KRT5P13647 590 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 IL10P22301 178 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 OXTRP30559 389 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 CAPGP40121 348 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ATXN3P54252 364 aaPredicted RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 NLRP11P59045 1033 aaKnown RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 SRPXP78539 464 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 CDKL1Q00532 357 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ELAVL2Q12926 359 aaKnown RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 TOR1AIP1Q5JTV8 583 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 TEX35Q5T0J7 233 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 LIPJQ5W064 366 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 DOK6Q6PKX4 331 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 CDHR3Q6ZTQ4 885 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ELMOD2Q8IZ81 293 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 LINC00518Q8N0U6 118 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 RELL2Q8NC24 303 aaPredicted RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 CDHR1Q96JP9 859 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 TAAR6Q96RI8 345 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 DCTN5Q9BTE1 182 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 LRRC61Q9BV99 259 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 SIRPDQ9H106 197 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 MOB1AQ9H8S9 216 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 HPS4Q9NQG7 708 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 DEPPQ9NTK1 212 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 ENTPD4Q9Y227 616 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 PIN4Q9Y237 131 aaKnown RBP3.87□□□□□ -1.79
LINC00560-201ENST00000564593 FGD6Q6ZV73 1430 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 RAB3GAP2Q9H2M9 1393 aa3.87□□□□□ -1.79
LINC00560-201ENST00000564593 URB2Q14146 1524 aaKnown RBP3.86□□□□□ -1.79
LINC00560-201ENST00000564593 MRC2Q9UBG0 1479 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 RAD54L2Q9Y4B4 1467 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 NESP48681 1621 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 PTPN23Q9H3S7 1636 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 TRBV5-4A0A0C4DH59 114 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 MEI4A8MW99 385 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 A8MXK9 166 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 PRPSAP2O60256 369 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 STAM2O75886 525 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 GNSP15586 552 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF10P21506 573 aaPredicted RBP3.86□□□□□ -1.79
LINC00560-201ENST00000564593 RABIFP47224 123 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 SLC1A6P48664 564 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 CCL11P51671 97 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 TKTL1P51854 596 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 NDUFV3P56181 108 aaKnown RBP3.86□□□□□ -1.79
LINC00560-201ENST00000564593 FASTKQ14296 549 aaKnown RBP3.86□□□□□ -1.79
LINC00560-201ENST00000564593 CARM1Q86X55 608 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 KDM8Q8N371 416 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 BANPQ8N9N5 519 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 SSC4DQ8WTU2 575 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms