RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 SPIN4Q56A73 249 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 SLC48A1Q6P1K1 146 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 GALNT12Q8IXK2 581 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 ARMC10Q8N2F6 343 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 BANPQ8N9N5 519 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 OR8K3Q8NH51 312 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 CDC26Q8NHZ8 85 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 KLHL29Q96CT2 875 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 FAM111AQ96PZ2 611 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 RASL10BQ96S79 203 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 EBPLQ9BY08 206 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 TIMMDC1Q9NPL8 285 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 SLC17A7Q9P2U7 560 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 LGALS13Q9UHV8 139 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 MCM8Q9UJA3 840 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 PLLPQ9Y342 182 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 ZNF780BQ9Y6R6 833 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 SVILO95425 2214 aa12.04□□□□□ -0.48
CTDSPL2-209ENST00000560620 A0A1W2PS29 197 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 TMEM200CA6NKL6 621 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 NPIPA5E9PKD4 350 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 TRIM13O60858 407 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 OR6B1O95007 311 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 PORP16435 677 aaPredicted RBP12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 ZNF24P17028 368 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 MST1P26927 711 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 SERPINB3P29508 390 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 FEN1P39748 380 aaKnown RBP12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 RFC3P40938 356 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 MEOX1P50221 254 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 GPR85P60893 370 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 PCLAFQ15004 111 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 ZNF750Q32MQ0 723 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 HLA-DQA1Q5Y7H0 255 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 ZNF324BQ6AW86 544 aaPredicted RBP12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 OPN5Q6U736 354 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 MDGA2Q7Z553 956 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 C9orf40Q8IXQ3 194 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 MMP21Q8N119 569 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 CPSF7Q8N684 471 aaKnown RBP12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 SLC22A8Q8TCC7 542 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 TCP10LQ8TDR4 215 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 SSC4DQ8WTU2 575 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 CHTF18Q8WVB6 975 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 ZBTB9Q96C00 473 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 TM4SF18Q96CE8 201 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 APIPQ96GX9 242 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 BRINP2Q9C0B6 783 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 RRAGDQ9NQL2 400 aaPredicted RBP12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 MKS1Q9NXB0 559 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 NPIPA1Q9UND3 350 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 SLC5A6Q9Y289 635 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 DLGAP4Q9Y2H0 992 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 PCDHA9Q9Y5H5 950 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 COL12A1Q99715 3063 aa12.03□□□□□ -0.48
CTDSPL2-209ENST00000560620 FLNCQ14315 2725 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TFECO14948 347 aaPredicted RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 RGS16O15492 202 aaPredicted RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 LRRTM2O43300 516 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 PEX1O43933 1283 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 CHEK2O96017 543 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 IGKV3-11P04433 115 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TUBBP07437 444 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 IL3P08700 152 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 ANXA4P09525 319 aaPredicted RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 UROSP10746 265 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 CPMP14384 443 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 ALDH3A1P30838 453 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 SSTR4P31391 388 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TDGF1P3P51864 188 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TRA2BP62995 288 aaKnown RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 HEPACAMQ14CZ8 416 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 SPRED3Q2MJR0 410 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 CLEC6AQ6EIG7 209 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 FAM180BQ6P0A1 224 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 ZNF227Q86WZ6 799 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 SULF2Q8IWU5 870 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 GPALPP1Q8IXQ4 340 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 MREGQ8N565 214 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 PSD4Q8NDX1 1056 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 MAGED4Q96JG8 741 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 FRMD6Q96NE9 622 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 MECRQ9BV79 373 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 GATA5Q9BWX5 397 aaPredicted RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TRIM45Q9H8W5 580 aaPredicted RBP12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 BCAP29Q9UHQ4 241 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 SH3BGRL2Q9UJC5 107 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 UTS2RQ9UKP6 389 aa12.02□□□□□ -0.49
CTDSPL2-209ENST00000560620 TRGV8A0A0C4DH27 118 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 C2orf92A0A1B0GVN3 265 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 CLEC18AA5D8T8 446 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 ASPDHA6ND91 283 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 OR6C76A6NM76 312 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 G3V3Y1 287 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 P04436 131 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 CSNK2A2P19784 350 aaPredicted RBP12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 TIA1P31483 386 aaKnown RBP eCLIP12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 GALNSP34059 522 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 PTGER1P34995 402 aa12.01□□□□□ -0.49
CTDSPL2-209ENST00000560620 CASP6P55212 293 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms