RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TUBB1Q9H4B7 451 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 CES1P1Q9UKY3 287 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 FIS1Q9Y3D6 152 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 TRAF6Q9Y4K3 522 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 PCDHGA10Q9Y5H3 936 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 DNAJC15Q9Y5T4 150 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 RELNP78509 3460 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 TRAV17A0A0B4J275 112 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 GNG14A0A1W2PPG7 69 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 C1orf226A1L170 272 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR5H15A6NDH6 313 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 TMEM114B3SHH9 223 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 SLC28A1O00337 649 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 RGS14O43566 566 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 PRKNO60260 465 aaPredicted RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR10H2O60403 315 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 F10P00742 488 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 IGKV3-11P04433 115 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 VIMP08670 466 aaKnown RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 IL3P08700 152 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ANXA4P09525 319 aaPredicted RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 SLC35E2P0CK97 266 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 NEFHP12036 1026 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 CPMP14384 443 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 TNNI3P19429 210 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 PIK3R1P27986 724 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 GALNSP34059 522 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 MLLT10P55197 1068 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 WDR4P57081 412 aaKnown RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 MLF1P58340 268 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ZNF763Q0D2J5 394 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ZNF169Q14929 603 aaPredicted RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 CHI3L2Q15782 390 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 SPRED3Q2MJR0 410 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 UGT3A2Q3SY77 523 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 PRR30Q53SZ7 412 aaPredicted RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 XKR7Q5GH72 579 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 SH2D4BQ5SQS7 431 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 SLC48A1Q6P1K1 146 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 Q6ZSR9 355 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 CLYBLQ8N0X4 340 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ZNF321PQ8N8H1 164 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 CATSPER1Q8NEC5 780 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR4K14Q8NGD5 310 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR1N1Q8NGS0 311 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR2T11Q8NH01 316 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 PPP1R14CQ8TAE6 165 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 AGR3Q8TD06 166 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 LRRC8CQ8TDW0 803 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ZNF721Q8TF20 911 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 C16orf78Q8WTQ4 265 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 TWIST2Q8WVJ9 160 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 PPWD1Q96BP3 646 aaKnown RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 RBM18Q96H35 190 aaKnown RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 FBXL20Q96IG2 436 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 METTL2AQ96IZ6 378 aaKnown RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 FCRL1Q96LA6 429 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ZNF317Q96PQ6 595 aaPredicted RBP8.71□□□□□ -1.02
LDLR-211ENST00000560173 FAIM2Q9BWQ8 316 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 OR8D2Q9GZM6 311 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 CDCP1Q9H5V8 836 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 LRTM1Q9HBL6 345 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 SLAMF7Q9NQ25 335 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 STMN3Q9NZ72 180 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 ABI3Q9P2A4 366 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 HEY2Q9UBP5 337 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 DLGAP4Q9Y2H0 992 aa8.71□□□□□ -1.02
LDLR-211ENST00000560173 TMEM200CA6NKL6 621 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 TTLL8A6PVC2 850 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 GABRR3A8MPY1 467 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 HRKO00198 91 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 PIP5K1BO14986 540 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 LSM1O15116 133 aaKnown RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ITM2AO43736 263 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 DYRK3O43781 588 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 LYPLA1O75608 230 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ZFAND5O76080 213 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 HSPA4LO95757 839 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 LINC00032P0C843 101 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 DRD2P14416 443 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 BGNP21810 368 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 GRK2P25098 689 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 TRHRP34981 398 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 GSTM5P46439 218 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 ALDH9A1P49189 494 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 XKP51811 444 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 ABCE1P61221 599 aaKnown RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ERVK-8P63133 956 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 TUBA3CQ13748 450 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 KIAA0040Q15053 153 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 NR6A1Q15406 480 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 INPP5JQ15735 1006 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ZNF750Q32MQ0 723 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 ZNF468Q5VIY5 522 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ATG16L1Q676U5 607 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 NOXRED1Q6NXP6 359 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 TUBA3EQ6PEY2 450 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 HSDL2Q6YN16 418 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 DDIASQ8IXT1 998 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 CCDC197Q8NCU1 140 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms