RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 OR4N5Q8IXE1 308 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TAGAPQ8N103 731 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 CACTIN-AS1Q8N1I8 211 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 RPL3LQ92901 407 aaKnown RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 HRASLS5Q96KN8 279 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 QRFPRQ96P65 431 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 OR2M4Q96R27 311 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 DUSP21Q9H596 190 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 GPR89AB7ZAQ6 455 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 J3QRK9 145 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZNF701M0R085 212 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 MAGEB3O15480 346 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 MFN2O95140 757 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 GPR89BP0CG08 455 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 NR2F1P10589 423 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 RPS6KA3P51812 740 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TMBIM6P55061 237 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 VBP1P61758 197 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 BTN3A2P78410 334 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 GRSF1Q12849 480 aaKnown RBP eCLIP10.05□□□□□ -0.8
CUX1-217ENST00000558836 SEC23BQ15437 767 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SYT16Q17RD7 645 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ABHD17CQ6PCB6 329 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ALDH16A1Q8IZ83 802 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SIMC1Q8NDZ2 872 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZCCHC10Q8TBK6 192 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 TBC1D15Q8TC07 691 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 HMGB4Q8WW32 186 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 KAT2AQ92830 837 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZG16BQ96DA0 208 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZNF347Q96SE7 839 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 NMNAT1Q9HAN9 279 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 GPR83Q9NYM4 423 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 SEC14L3Q9UDX4 400 aa10.05□□□□□ -0.8
CUX1-217ENST00000558836 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.05□□□□□ -0.8
CUX1-217ENST00000558836 A0A0J9YVX5 310 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 RGS10O43665 173 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 PRICKLE3O43900 615 aaPredicted RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 AIFM1O95831 613 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 BCL10O95999 233 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 IFNA14P01570 189 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 HMGN2P05204 90 aaKnown RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 CHRM5P08912 532 aaPredicted RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 MAGP20916 626 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ATP5A1P25705 553 aaKnown RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 OLR1P78380 273 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 HTR4Q13639 388 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 LTB4RQ15722 352 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TCTN3Q6NUS6 607 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 MAPKAP1Q9BPZ7 522 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 C1QTNF7Q9BXJ2 289 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TCEAL2Q9H3H9 227 aaPredicted RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 NEUROD4Q9HD90 331 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TMEM74BQ9NUR3 256 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TAS2R16Q9NYV7 291 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 PSME2Q9UL46 239 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 PCDHGA2Q9Y5H1 932 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ENPP4Q9Y6X5 453 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TRIOBPQ9H2D6 2365 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ZNF860A6NHJ4 632 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 MAN2B1O00754 1011 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 FRS3O43559 492 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 NTN1O95631 604 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ITGA2P17301 1181 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TPMTP51580 245 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 PTGES3Q15185 160 aaKnown RBP10.04□□□□□ -0.8
CUX1-217ENST00000558836 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 RAB2BQ8WUD1 216 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ZNF556Q9HAH1 456 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 THSD1Q9NS62 852 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 ASB4Q9Y574 426 aa10.04□□□□□ -0.8
CUX1-217ENST00000558836 TCRBV21S2A2A0A5A6 115 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 GSAPA4D1B5 854 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 PRR19A6NJB7 356 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 DNAJB5O75953 348 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 CCNB2O95067 398 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 EIF2S1P05198 315 aaKnown RBP10.03□□□□□ -0.8
CUX1-217ENST00000558836 PVRP15151 417 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 POLR2CP19387 275 aaPredicted RBP10.03□□□□□ -0.8
CUX1-217ENST00000558836 ITIH1P19827 911 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 PTNP21246 168 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 CTSKP43235 329 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 NCS1P62166 190 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 CTF1Q16619 201 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 C11orf74Q86VG3 221 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 OR9A2Q8NGT5 310 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 SUN3Q8TAQ9 357 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 NDNFQ8TB73 568 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 ZNF566Q969W8 418 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 SLC35G5Q96KT7 338 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 RIPOR3Q96MK2 946 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 IL4I1Q96RQ9 567 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 COPS4Q9BT78 406 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 GABARAPL3Q9BY60 117 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 ALOXE3Q9BYJ1 711 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 SRMSQ9H3Y6 488 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 MVB12BQ9H7P6 319 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 ACOT13Q9NPJ3 140 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 C11orf16Q9NQ32 467 aa10.03□□□□□ -0.8
CUX1-217ENST00000558836 NCKAP1Q9Y2A7 1128 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms