RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 A0A1W2PRU2 124 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 NEDD8-MDP1E9PL57 170 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 K7ESM1 405 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 CASKO14936 926 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 ATXN8OSP0DMR3 200 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 ITGA2P17301 1181 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 POU3F3P20264 500 aaPredicted RBP11.71□□□□□ -0.53
LDLR-205ENST00000557933 CSNK2BP67870 215 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 ZNF763Q0D2J5 394 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 GRIN2CQ14957 1233 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 TEAD4Q15561 434 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 GGTA1PQ4G0N0 100 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 CNIH2Q6PI25 160 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 TMEM220Q6QAJ8 160 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 TRMT11Q7Z4G4 463 aaKnown RBP11.71□□□□□ -0.53
LDLR-205ENST00000557933 TRAPPC5Q8IUR0 188 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 Q8N402 240 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 RASGEF1AQ8N9B8 481 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 ASZ1Q8WWH4 475 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 UPRTQ96BW1 309 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 ZBED6CLQ96FA7 236 aaPredicted RBP11.71□□□□□ -0.53
LDLR-205ENST00000557933 CCDC120Q96HB5 630 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 TTLL2Q9BWV7 592 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 CDCA4Q9BXL8 241 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 SLC22A4Q9H015 551 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 RNF121Q9H920 327 aa11.71□□□□□ -0.53
LDLR-205ENST00000557933 CXXC1Q9P0U4 656 aaPredicted RBP11.71□□□□□ -0.53
LDLR-205ENST00000557933 TRAV6A0A075B6T7 132 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 A0A1W2PQ72 361 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 ANTXRLA6NF34 631 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 ANHXE9PGG2 379 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 SLC2A2P11168 524 aaPredicted RBP11.71□□□□□ -0.54
LDLR-205ENST00000557933 CSTF2P33240 577 aaKnown RBP eCLIP11.71□□□□□ -0.54
LDLR-205ENST00000557933 DDOSTP39656 456 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 HNMTP50135 292 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 GINS1Q14691 196 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 QPRTQ15274 297 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 SNAPC1Q16533 368 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 ZNF750Q32MQ0 723 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 KIAA1161Q6NSJ0 714 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 TMC8Q8IU68 726 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 OR4F15Q8NGB8 312 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 OR4M1Q8NGD0 313 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 OR6C4Q8NGE1 309 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 C16orf78Q8WTQ4 265 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 DEDD2Q8WXF8 326 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 DACT3Q96B18 629 aaPredicted RBP11.71□□□□□ -0.54
LDLR-205ENST00000557933 CRELD1Q96HD1 420 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 MAP6Q96JE9 813 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 CCDC32Q9BV29 185 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 KATNB1Q9BVA0 655 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 FAM83DQ9H4H8 585 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 CWH43Q9H720 699 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 ASAH2Q9NR71 780 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 STUB1Q9UNE7 303 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 NTNG1Q9Y2I2 539 aa11.71□□□□□ -0.54
LDLR-205ENST00000557933 FAM240BA0A1B0GVZ2 78 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 A0A1W2PS29 197 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 ZC3H12DA2A288 527 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 ZNF670-ZNF695F2Z2N8 137 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 TMEM189-UBE2V1I3L0A0 370 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 ALX3O95076 343 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 YES1P07947 543 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 ELAVL4P26378 380 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 PSMB5P28074 263 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 GSTM5P46439 218 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 GNG2P59768 71 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 DSTNP60981 165 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 HEPACAMQ14CZ8 416 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 DCST1Q5T197 706 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 SLC39A5Q6ZMH5 540 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 TMEM25Q86YD3 366 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 BMPERQ8N8U9 685 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 OR52N2Q8NGI0 321 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 GRPEL2Q8TAA5 225 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 CREB3L4Q8TEY5 395 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 F2RL3Q96RI0 385 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 REV1Q9UBZ9 1251 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 LSM2Q9Y333 95 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 COL4A6Q14031 1691 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 HMX3A6NHT5 357 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FAM183AA6NL82 134 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 B4GALT2O60909 372 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FURINP09958 794 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 CELP19835 753 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FABP5Q01469 135 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 KRR1Q13601 381 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 CRB2Q5IJ48 1285 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FAM27D1Q5T7N8 215 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 TRIQKQ629K1 86 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 MED27Q6P2C8 311 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 TRIM40Q6P9F5 258 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 CCDC149Q6ZUS6 474 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FAM9CQ8IZT9 166 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 AMER3Q8N944 861 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 CHTF18Q8WVB6 975 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 KAT2AQ92830 837 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 C11orf24Q96F05 449 aaPredicted RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 DEFB118Q96PH6 123 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 RC3H2Q9HBD1 1191 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms