RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ANKRD26P1Q6NSI1 321 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 JMJD6Q6NYC1 403 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-225ENST00000556798 FAM47EQ6ZV65 393 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 ASB18Q6ZVZ8 466 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 IKBIPQ70UQ0 350 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 MAVSQ7Z434 540 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 PIWIL2Q8TC59 973 aaKnown RBP16.3■□□□□ 0.2
SHMT2-225ENST00000556798 RIT1Q92963 219 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 VMP1Q96GC9 406 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 C7orf26Q96N11 449 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 PELOQ9BRX2 385 aaKnown RBP16.3■□□□□ 0.2
SHMT2-225ENST00000556798 CNPPD1Q9BV87 410 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 MIEF1Q9NQG6 463 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 PPIEQ9UNP9 301 aaKnown RBP16.3■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF780BQ9Y6R6 833 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 GOLGA8QA0A0J9YX86 632 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 GOLGA8OA6NCC3 632 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 GOLGA8NF8WBI6 632 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 MAN1A2O60476 641 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 PRB1P04280 392 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 SFTPCP11686 197 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 PORP16435 677 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 CSNK2A2P19784 350 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 NT5EP21589 574 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ST13P50502 369 aaKnown RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 CLCN2P51788 898 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ERVK-8P63133 956 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 BIKQ13323 160 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF267Q14586 743 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 CRB2Q5IJ48 1285 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 COLEC12Q5KU26 742 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ISLR2Q6UXK2 745 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 MORN4Q8NDC4 146 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 THAP3Q8WTV1 239 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF681Q96N22 645 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 NPAS2Q99743 824 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 WDR55Q9H6Y2 383 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-225ENST00000556798 EHD3Q9NZN3 535 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 PSME2Q9UL46 239 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ERVK-19Q9WJR5 959 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ENTPD4Q9Y227 616 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF451Q9Y4E5 1061 aa16.29■□□□□ 0.2
SHMT2-225ENST00000556798 COL6A6A6NMZ7 2263 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 TRPC5OSA6NMA1 111 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 SLCO1B7G3V0H7 640 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 PRKNO60260 465 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 F10P00742 488 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 CT62P0C5K7 136 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 EPHA3P29320 983 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 CD97P48960 835 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 EMX2Q04743 252 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 LTB4RQ15722 352 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 SPRED3Q2MJR0 410 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 SLC9B1Q4ZJI4 515 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 PTRH1Q86Y79 214 aaKnown RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 GALNT12Q8IXK2 581 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 LRRC25Q8N386 305 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 ARFGAP2Q8N6H7 521 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 LSM14AQ8ND56 463 aaKnown RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 C7orf57Q8NEG2 295 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 ADCY4Q8NFM4 1077 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 OR1N1Q8NGS0 311 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF721Q8TF20 911 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 SENP5Q96HI0 755 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 DEFB126Q9BYW3 111 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 BRINP2Q9C0B6 783 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 SLC35C2Q9NQQ7 365 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 GIMAP4Q9NUV9 329 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 EIF3LQ9Y262 564 aaKnown RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 WBP11Q9Y2W2 641 aaKnown RBP16.28■□□□□ 0.2
SHMT2-225ENST00000556798 USH1CQ9Y6N9 552 aa16.28■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF195O14628 629 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 DYRK3O43781 588 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 KLHL41O60662 606 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 VPS4BO75351 444 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 G6PDP11413 515 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 LBPP18428 481 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 ASMTP46597 345 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 DIO3P55073 304 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 NFATC3Q12968 1075 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 MAD2L1Q13257 205 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-225ENST00000556798 MFAP5Q13361 173 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF385BQ569K4 471 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 H3F3CQ6NXT2 135 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 FAM111BQ6SJ93 734 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 LARP4Q71RC2 724 aaKnown RBP eCLIP16.27■□□□□ 0.2
SHMT2-225ENST00000556798 CCDC116Q8IYX3 515 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 SLC5A8Q8N695 610 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 KRTCAP2Q8N6L1 136 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 OR9A2Q8NGT5 310 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 NUDT8Q8WV74 236 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 FBXL20Q96IG2 436 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 CDCP1Q9H5V8 836 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 REEP4Q9H6H4 257 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 LIN28AQ9H9Z2 209 aaKnown RBP16.27■□□□□ 0.2
SHMT2-225ENST00000556798 CXorf21Q9HAI6 301 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 PLA2G3Q9NZ20 509 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 NOP53Q9NZM5 478 aaKnown RBP16.27■□□□□ 0.2
SHMT2-225ENST00000556798 COPS7AQ9UBW8 275 aa16.27■□□□□ 0.2
SHMT2-225ENST00000556798 PCDHGB7Q9Y5F8 929 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms