RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 C17orf105B2RV13 164 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NPIPA3F8WFD2 350 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 GAPDHSO14556 408 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 ARPC2O15144 300 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 B4GAT1O43505 415 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 LRP3O75074 770 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CSDE1O75534 798 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 WBP4O75554 376 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 PRKRAO75569 313 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 PDE9AO76083 593 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 OR4F21O95013 312 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PIGNO95427 931 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CPNE6O95741 557 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 IGHEP01854 428 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NR3C1P04150 777 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CSF2RAP15509 400 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 TSPAN8P19075 237 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 SRD5A2P31213 254 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 FCGR2BP31994 310 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 ADRA1AP35348 466 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PTGFRP43088 359 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NUMBP49757 651 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 RGS4P49798 205 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CCL11P51671 97 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 LBX1P52954 281 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NAPAP54920 295 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 MLLT10P55197 1068 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 SLC8A3P57103 927 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 HAND2P61296 217 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 MAT1AQ00266 395 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 CNTN2Q02246 1040 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PNRC1Q12796 327 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 PDK3Q15120 406 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 P2RY14Q15391 338 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 SPATA46Q5T0L3 261 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 GRTP1Q5TC63 336 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NKAIN2Q5VXU1 208 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ASPHD2Q6ICH7 369 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 OR4A47Q6IF82 309 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ZNF613Q6PF04 617 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CD164L2Q6UWJ8 174 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 KIF6Q6ZMV9 814 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 SLC16A9Q7RTY1 509 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ATG9AQ7Z3C6 839 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PIWIL4Q7Z3Z4 852 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 FAM228AQ86W67 206 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 GCNT2Q8N0V5 402 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CRYBG2Q8N1P7 616 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 UBE2J2Q8N2K1 259 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 DNAJC22Q8N4W6 341 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NECAB1Q8N987 351 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 SIDT2Q8NBJ9 832 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 MINDY2Q8NBR6 621 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NPEPL1Q8NDH3 523 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 TRPV3Q8NET8 790 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ZNF397Q8NF99 534 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 STEAP2Q8NFT2 490 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 OR4C15Q8NGM1 316 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 OR10Q1Q8NGQ4 319 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 OR13J1Q8NGT2 312 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 DQX1Q8TE96 717 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 GIPC3Q8TF64 312 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 U2AF1L4Q8WU68 220 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 STARD8Q92502 1023 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 GLYATL1Q969I3 302 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 MCHR2Q969V1 340 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PHF21AQ96BD5 680 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 DHX58Q96C10 678 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ZNF274Q96GC6 653 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 DHTKD1Q96HY7 919 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 SENP8Q96LD8 212 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PRICKLE1Q96MT3 831 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 GUCD1Q96NT3 240 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 DEFB118Q96PH6 123 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 BTBD9Q96Q07 612 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 VPS35Q96QK1 796 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 RAB40CQ96S21 281 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NPAS2Q99743 824 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 CITED1Q99966 193 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 BTBD10Q9BSF8 475 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ALKBH7Q9BT30 221 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 ALG12Q9BV10 488 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 WWTR1Q9GZV5 400 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ZMYND12Q9H0C1 365 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 PNNQ9H307 717 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 C10orf88Q9H8K7 445 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 Q9H8V8 135 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 MARCH7Q9H992 704 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ACKR4Q9NPB9 350 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 HPS4Q9NQG7 708 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 DDX28Q9NUL7 540 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 TBC1D13Q9NVG8 400 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 ZNHIT6Q9NWK9 470 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 GDAP2Q9NXN4 497 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 C6orf203Q9P0P8 240 aaPredicted RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 ERVK-18Q9QC07 812 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 BCAP29Q9UHQ4 241 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 MRTO4Q9UKD2 239 aaKnown RBP2.02□□□□□ -2.09
SRP54-204ENST00000553923 KIAA1257Q9ULG3 409 aa2.02□□□□□ -2.09
SRP54-204ENST00000553923 NME7Q9Y5B8 376 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms