RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MRNIPQ6NTE8 343 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 LETMD1Q6P1Q0 360 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SPNS2Q8IVW8 549 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PHACTR4Q8IZ21 702 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 GPR26Q8NDV2 337 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 OR4M1Q8NGD0 313 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 LMX1AQ8TE12 382 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ANKRD49Q8WVL7 239 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 NCLNQ969V3 563 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 AP2M1Q96CW1 435 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SIGLEC11Q96RL6 698 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 LRRC61Q9BV99 259 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TEX101Q9BY14 249 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 BRINP2Q9C0B6 783 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 WDR26Q9H7D7 661 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CATSPERZQ9NTU4 200 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 IL17CQ9P0M4 197 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 APOBEC3BQ9UH17 382 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CFL2Q9Y281 166 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CRYL1Q9Y2S2 319 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MAP1BP46821 2468 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PLD2O14939 933 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ANKRD28O15084 1053 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 YKT6O15498 198 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SIX3O95343 332 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CEACAM5P06731 702 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 FTH1P19P0C7X4 201 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PRR35P0CG20 571 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CFL1P23528 166 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MC4RP32245 332 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CSTF2P33240 577 aaKnown RBP eCLIP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 GRK5P34947 590 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 GPR1P46091 355 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 KCNC1P48547 511 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CSNK2BP67870 215 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CDK3Q00526 305 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 DPTQ07507 201 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PRKG2Q13237 762 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SNTA1Q13424 505 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SEMA3AQ14563 771 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 IRF3Q14653 427 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TBCEQ15813 527 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PROX2Q3B8N5 592 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 HECTD2Q5U5R9 776 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SHQ1Q6PI26 577 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 DLEU7Q6UYE1 221 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 DET1Q7L5Y6 550 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ISCA2Q86U28 154 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TSPYL5Q86VY4 417 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CYP4Z1Q86W10 505 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ZFAND4Q86XD8 727 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MARCH9Q86YJ5 346 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SFTPA2Q8IWL1 248 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CHCHD4Q8N4Q1 142 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 YIPF7Q8N8F6 280 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 OR8J3Q8NGG0 315 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 OR56A4Q8NGH8 313 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 LILRB1Q8NHL6 650 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CCL4L1Q8NHW4 92 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 RHBDF1Q96CC6 855 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 WDR92Q96MX6 357 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF583Q96ND8 569 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 FRMD6Q96NE9 622 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TM9SF2Q99805 663 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 KCNS3Q9BQ31 491 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CHCHD6Q9BRQ6 235 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 COPS4Q9BT78 406 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 GABARAPL1Q9H0R8 117 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 OR51E2Q9H255 320 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 FAM83DQ9H4H8 585 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MAGIXQ9H6Y5 334 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 RNF167Q9H6Y7 350 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PRDM8Q9NQV8 689 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 RASSF1Q9NS23 344 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TMEM45AQ9NWC5 275 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 COQ3Q9NZJ6 369 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 WASF3Q9UPY6 502 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 AP3M1Q9Y2T2 418 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PCYT1BQ9Y5K3 369 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 KCNE2Q9Y6J6 123 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SCN8AQ9UQD0 1980 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 A0A075B6Q4 140 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 LY6G6EA0A0G2JKS1 128 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 LINC00854A0A1B0GVQ3 168 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CACNB4O00305 520 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CXCR6O00574 342 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CASC3O15234 703 aaKnown RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 YY2O15391 372 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 GPR39O43194 453 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 AKR7A2O43488 359 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SERPINI2O75830 405 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CYP7B1O75881 506 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SCELO95171 688 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 C1QBP02746 253 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CCNYL3P0C7X3 344 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 ADORA3P0DMS8 318 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF37AP17032 561 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 BPIP17213 487 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 HOXB6P17509 224 aaKnown RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 PSMA3P25788 255 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms