RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 NHSL2Q5HYW2 709 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 FNDC7Q5VTL7 733 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 BICRALQ6AI39 1079 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 TMEM64Q6YI46 380 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF793Q6ZN11 406 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 UBE3DQ7Z6J8 389 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 KRT78Q8N1N4 520 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 PPP1R14CQ8TAE6 165 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 DIO2Q92813 273 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 GNRHR2Q96P88 292 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 DGAT2Q96PD7 388 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 GAL3ST4Q96RP7 486 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 CCL19Q99731 98 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 EGFL8Q99944 293 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 UBQLN3Q9H347 655 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 UBTD1Q9HAC8 227 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 C6orf203Q9P0P8 240 aaPredicted RBP11.64□□□□□ -0.55
SCAF11-208ENST00000546534 NDRG3Q9UGV2 375 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF490Q9ULM2 529 aaPredicted RBP11.64□□□□□ -0.55
SCAF11-208ENST00000546534 VWA7Q9Y334 891 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 TESMINQ9Y4I5 508 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 ZANQ9Y493 2812 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 NPEPPSL1A6NEC2 478 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 RNF212BA8MTL3 300 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 CTIFO43310 598 aaKnown RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 PRAMEF4O60810 478 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 CNOT4O95628 575 aaKnown RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 PGAM1P18669 254 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 ATP5A1P25705 553 aaKnown RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 RPL21P46778 160 aaKnown RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF75DP51815 510 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 CDKL1Q00532 357 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 RCAN2Q14206 197 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 WIPI1Q5MNZ9 446 aaPredicted RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 TBCELQ5QJ74 424 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 PRAMEF9Q5VWM5 478 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 CNTN4Q8IWV2 1026 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 PHC2Q8IXK0 858 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 CCDC116Q8IYX3 515 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 ACOT4Q8N9L9 421 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 SLC44A1Q8WWI5 657 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 ABTB1Q969K4 478 aaPredicted RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 NTNG2Q96CW9 530 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 FBXL20Q96IG2 436 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 RILPQ96NA2 401 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 SFXN3Q9BWM7 321 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 PITHD1Q9GZP4 211 aaPredicted RBP11.63□□□□□ -0.55
SCAF11-208ENST00000546534 C15orf41Q9Y2V0 281 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 IKBKGQ9Y6K9 419 aa11.63□□□□□ -0.55
SCAF11-208ENST00000546534 FREM3P0C091 2139 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 DEFB108AA8MXU0 73 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 RTCAO00442 366 aaKnown RBP11.62□□□□□ -0.55
SCAF11-208ENST00000546534 DYRK3O43781 588 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 FPR1P21462 350 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 CPN2P22792 545 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 SLC6A12P48065 614 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 KCNC1P48547 511 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 HNMTP50135 292 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 NAGLUP54802 743 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 TGM3Q08188 693 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 TOMM20Q15388 145 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 TTC27Q6P3X3 843 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 PLXDC2Q6UX71 529 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 SLC29A4Q7RTT9 530 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 NAT8LQ8N9F0 302 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 ZPLD1Q8TCW7 415 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 INTS12Q96CB8 462 aaKnown RBP11.62□□□□□ -0.55
SCAF11-208ENST00000546534 PIK3IP1Q96FE7 263 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 RBM18Q96H35 190 aaKnown RBP11.62□□□□□ -0.55
SCAF11-208ENST00000546534 ART5Q96L15 291 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 WFIKKN1Q96NZ8 548 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 KCNC2Q96PR1 638 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 UCN2Q96RP3 112 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 TUBA1CQ9BQE3 449 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 TBCDQ9BTW9 1192 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 ANGPTL4Q9BY76 406 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 ROGDIQ9GZN7 287 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 WWTR1Q9GZV5 400 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.62□□□□□ -0.55
SCAF11-208ENST00000546534 NINQ8N4C6 2090 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 NBEAL1Q6ZS30 2694 aa11.62□□□□□ -0.55
SCAF11-208ENST00000546534 IQANK1A0A1B0GTG1 560 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 A8MXE2 369 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 TP53I11O14683 189 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 RCBTB2O95199 551 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 SNX4O95219 450 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 CYP4B1P13584 511 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF37AP17032 561 aaPredicted RBP11.61□□□□□ -0.55
SCAF11-208ENST00000546534 CD22P20273 847 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 MASP1P48740 699 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 SLC37A1P57057 533 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 FBXW4P57775 412 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 HERVK_113P63132 956 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ERVK-8P63133 956 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 PLIN5Q00G26 463 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 KRTAP1-1Q07627 177 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF267Q14586 743 aaPredicted RBP11.61□□□□□ -0.55
SCAF11-208ENST00000546534 EBPQ15125 230 aaKnown RBP11.61□□□□□ -0.55
SCAF11-208ENST00000546534 FAM45BPQ6NSW5 357 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 RNF111Q6ZNA4 994 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms