RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LILRA3Q8N6C8 439 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 FOXJ1Q92949 421 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 ZC3HAV1LQ96H79 300 aaKnown RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 KCTD7Q96MP8 289 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 NELL2Q99435 816 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 MIXL1Q9H2W2 232 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 RMI1Q9H9A7 625 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 FGF20Q9NP95 211 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 SH2B3Q9UQQ2 575 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 KIAA0100Q14667 2235 aaKnown RBP13.02□□□□□ -0.32
VPS33A-208ENST00000543633 SNTNA6NMZ2 147 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 FAM227AF5H4B4 570 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 H3BN98 237 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 CDRT1O95170 752 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 CSF3P09919 207 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 PDHA2P29803 388 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 WNT4P56705 351 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 TPBGQ13641 420 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 LEXMQ3ZCV2 418 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 GPAT3Q53EU6 434 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 ZMAT1Q5H9K5 638 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 PDZK1Q5T2W1 519 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 PPP2R2DQ66LE6 453 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 KIAA0907Q7Z7F0 614 aaPredicted RBP13.02□□□□□ -0.33
VPS33A-208ENST00000543633 NOXA1Q86UR1 476 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 GATAD2AQ86YP4 633 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 TCTE3Q8IZS6 198 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 TCEANCQ8N8B7 351 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 OR52I1Q8NGK6 324 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 COQ7Q99807 217 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 NDEL1Q9GZM8 345 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 ANKRA2Q9H9E1 313 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 SEMA3GQ9NS98 782 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 ZSCAN32Q9NX65 697 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 PLEKHB1Q9UF11 243 aaPredicted RBP13.02□□□□□ -0.33
VPS33A-208ENST00000543633 KLHL20Q9Y2M5 609 aa13.02□□□□□ -0.33
VPS33A-208ENST00000543633 C17orf113A0A1B0GUU1 675 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 POLR1CO15160 346 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PROM1O43490 865 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LEFTY1O75610 366 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 CYP7B1O75881 506 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 SOX14O95416 240 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 GBAP04062 536 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 NR2F6P10588 404 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 MYL12AP19105 171 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 GSTM3P21266 225 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 XPAP23025 273 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 FGF9P31371 208 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PPP3R1P63098 170 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 RAB40BQ12829 278 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 HNRNPA0Q13151 305 aaKnown RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 MLC1Q15049 377 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 SYT14P1Q58G82 188 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ZNF805Q5CZA5 627 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 TMIGD1Q6UXZ0 262 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LIPIQ6XZB0 460 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ZNF765Q7L2R6 523 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 NANOGNBQ7Z5D8 188 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 NR4A3Q92570 626 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 FGF11Q92914 225 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 AP2M1Q96CW1 435 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PAWRQ96IZ0 340 aaKnown RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LINC00615Q96LM1 132 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 FRMD6Q96NE9 622 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 QRFPRQ96P65 431 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 TMEM121BQ9BXQ6 578 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 RHBGQ9H310 441 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 DPEP2Q9H4A9 486 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 RNF121Q9H920 327 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PELI2Q9HAT8 420 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ABCB9Q9NP78 766 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 KLHL21Q9UJP4 597 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 EXOSC1Q9Y3B2 195 aaKnown RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 FABP12A6NFH5 140 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 B4DXG7 233 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 AP3D1O14617 1153 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LILRB5O75023 590 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 NME6O75414 186 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ALX3O95076 343 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ELFN1P0C7U0 828 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 MYL9P24844 172 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 EFNB1P98172 346 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 CDK5Q00535 292 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 CHRNEQ04844 493 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 SLAMF1Q13291 335 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 RIN1Q13671 783 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 YIF1BQ5BJH7 314 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 RPS26P11Q5JNZ5 115 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-208ENST00000543633 ENTPD8Q5MY95 495 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PRAMEF14Q5SWL7 426 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LCN1P1Q5VSP4 162 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PRAMEF13Q5VWM6 474 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LIPKQ5VXJ0 399 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 QSOX2Q6ZRP7 698 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 USP30Q70CQ3 517 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 LAPTM4BQ86VI4 370 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 FAM129CQ86XR2 697 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PEX5LQ8IYB4 626 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 CACTIN-AS1Q8N1I8 211 aa13.01□□□□□ -0.33
VPS33A-208ENST00000543633 PLA2G15Q8NCC3 412 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms