RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 EEF1E1O43324 174 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 ACSL3O95573 720 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 CDK9P50750 372 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 SLC37A1P57057 533 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 PLIN5Q00G26 463 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 FRG1Q14331 258 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 EBPQ15125 230 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 PDK4Q16654 411 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 AP5B1Q2VPB7 878 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 NHSL2Q5HYW2 709 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 SHEQ5VZ18 495 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 C18orf63Q68DL7 685 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 SLC29A4Q7RTT9 530 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 PM20D2Q8IYS1 436 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 CIARTQ8N365 385 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 TCAIMQ8N3R3 496 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 SNX31Q8N9S9 440 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 C7orf57Q8NEG2 295 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 DIO2Q92813 273 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 WDYHV1Q96HA8 205 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 TRIB1Q96RU8 372 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 NAP1L3Q99457 506 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 UGT2B28Q9BY64 529 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 RPF2Q9H7B2 306 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 CNOT10Q9H9A5 744 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 POPDC3Q9HBV1 291 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 CAMK2AQ9UQM7 478 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 IKBKGQ9Y6K9 419 aa16.3■□□□□ 0.2
CLSTN3-214ENST00000542663 SAP18O00422 153 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 STK16O75716 305 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TRAPPC6AO75865 159 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TGFB1P01137 390 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 ALOX15P16050 662 aaPredicted RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 BMP7P18075 431 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 CTSSP25774 331 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 SOX18P35713 384 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 CASP2P42575 452 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 SSR2P43308 183 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 HNRNPH2P55795 449 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 CHIT1Q13231 466 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 LAPTM5Q13571 262 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 OR4D1Q15615 310 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TBCCQ15814 346 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 SPRED3Q2MJR0 410 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TMEM35AQ53FP2 167 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TBCELQ5QJ74 424 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 TMEM64Q6YI46 380 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 RNF111Q6ZNA4 994 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 LAS2Q8IYD9 372 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 ST13P4Q8IZP2 240 aaPredicted RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 PDIK1LQ8N165 341 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 ZNF441Q8N8Z8 693 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 COX4I2Q96KJ9 171 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 GNRHR2Q96P88 292 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 YIPF4Q9BSR8 244 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 PHACTR1Q9C0D0 580 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 DDX47Q9H0S4 455 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 ZNF395Q9H8N7 513 aaPredicted RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 MOCS1Q9NZB8 636 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 PTBP2Q9UKA9 531 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 JRKLQ9Y4A0 524 aa16.29■□□□□ 0.2
CLSTN3-214ENST00000542663 WASHC1A8K0Z3 465 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 DYRK3O43781 588 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 IL18BPO95998 194 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 OPRM1P35372 400 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 SLCO1A2P46721 670 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 FBXW4P57775 412 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 TNFRSF17Q02223 184 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 IRF8Q02556 426 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 MGAT5Q09328 741 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 SLAMF1Q13291 335 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 BIKQ13323 160 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 ZNF267Q14586 743 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 PAGE2BQ5JRK9 111 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 CDKL4Q5MAI5 379 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 KHDRBS2Q5VWX1 349 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 OR4C11Q6IEV9 310 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 SULT1C3Q6IMI6 304 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 SYDE1Q6ZW31 735 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 GPSM1Q86YR5 675 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 ANKMY2Q8IV38 441 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 VWA5B2Q8N398 1253 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 RNF175Q8N4F7 328 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 C9orf106Q8NAJ2 232 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 PDPRQ8NCN5 879 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 ACTRT1Q8TDG2 376 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 NUDT8Q8WV74 236 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 TANKQ92844 425 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 NTNG2Q96CW9 530 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 VPS39Q96JC1 886 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 RILPQ96NA2 401 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 KRT12Q99456 494 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 ANGPTL4Q9BY76 406 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 OR51B5Q9H339 312 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 CAB39LQ9H9S4 337 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 RYDENQ9NUL5 291 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 C15orf41Q9Y2V0 281 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 TLN2Q9Y4G6 2542 aa16.28■□□□□ 0.2
CLSTN3-214ENST00000542663 IQANK1A0A1B0GTG1 560 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms