RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 GRIP2Q9C0E4 1043 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 RNF112Q9ULX5 631 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 DLGAP4Q9Y2H0 992 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CHCHD2Q9Y6H1 151 aaPredicted RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 SLC35F4A4IF30 521 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 C17orf105B2RV13 164 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 E5RI56 91 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 NDUFS7O75251 213 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 ERLIN1O75477 346 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 LRATO95237 230 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 B3GALT4O96024 378 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 FBXO45P0C2W1 286 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 CDH1P12830 882 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 PTPN6P29350 595 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 NAGLUP54802 743 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 RAB8AP61006 207 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 TBPL1P62380 186 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 WDR93Q6P2C0 686 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 VWA1Q6PCB0 445 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 STRA8Q7Z7C7 330 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 CLNKQ7Z7G1 428 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 GPSM1Q86YR5 675 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 CREG2Q8IUH2 290 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 TAGAPQ8N103 731 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 OR10G3Q8NGC4 313 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 ATL1Q8WXF7 558 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 HAUS8Q9BT25 410 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 TRAF4Q9BUZ4 470 aaPredicted RBP8.3□□□□□ -1.08
USP28-205ENST00000537706 PACSIN1Q9BY11 444 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 OR10A4Q9H209 315 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 P2RY12Q9H244 342 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 MANSC1Q9H8J5 431 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 PROK2Q9HC23 129 aa8.3□□□□□ -1.08
USP28-205ENST00000537706 EIF2B3Q9NR50 452 aaKnown RBP8.3□□□□□ -1.08
USP28-205ENST00000537706 TRBC2A0A5B9 178 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 EMC8O43402 210 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 TGFAP01135 160 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 THBDP07204 575 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 RBP3P10745 1247 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 APEHP13798 732 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 PCMT1P22061 227 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 HNF4AP41235 474 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 SLC1A1P43005 524 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 NAP1L1P55209 391 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 EFTUD2Q15029 972 aaKnown RBP eCLIP8.29□□□□□ -1.082e-6■■■■■ 27.7
USP28-205ENST00000537706 RAB35Q15286 201 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 EXOC3L2Q2M3D2 409 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ZNF672Q499Z4 452 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 AGAP6Q5VW22 663 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 AAGABQ6PD74 315 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 DARS2Q6PI48 645 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 DNAJC14Q6Y2X3 702 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 SLC29A4Q7RTT9 530 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 FAM83FQ8NEG4 500 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 TRPV3Q8NET8 790 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 OR1J4Q8NGS1 313 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 OR13J1Q8NGT2 312 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 FAM216AQ8WUB2 273 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ALKBH8Q96BT7 664 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 RILPQ96NA2 401 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 GNRHR2Q96P88 292 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 JMJD8Q96S16 334 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ALOXE3Q9BYJ1 711 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 UBQLN3Q9H347 655 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 RNF14Q9UBS8 474 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 VTI1BQ9UEU0 232 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ZFP69BQ9UJL9 534 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 SLC22A20A6NK97 555 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 PLOD2O00469 737 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 CD3EAPO15446 510 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 ZNF354AO60765 605 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 VENTXO95231 258 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 RHOXF2BP0C7M4 288 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 IMPA1P29218 277 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 TMED10P49755 219 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 STXBP1P61764 594 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 CDH17Q12864 832 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 GBX1Q14549 363 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 SEMA3AQ14563 771 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 PARP6Q2NL67 630 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ALKBH2Q6NS38 261 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 LCTLQ6UWM7 567 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 SDCCAG8Q86SQ7 713 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 YRDCQ86U90 279 aaKnown RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 LRRC56Q8IYG6 542 aaPredicted RBP8.29□□□□□ -1.08
USP28-205ENST00000537706 MMGT1Q8N4V1 131 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 LRRC57Q8N9N7 239 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ZNF610Q8N9Z0 462 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 OR14L1PQ8NHC6 308 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 TMEM41AQ96HV5 264 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 RHOXF2Q9BQY4 288 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 ZNF747Q9BV97 191 aa8.29□□□□□ -1.08
USP28-205ENST00000537706 PABPN1LA6NDY0 278 aaKnown RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 APOC4-APOC2K7ER74 178 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 SPOPO43791 374 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 B3GALT2O43825 422 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 CTNSO60931 367 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 SEC31AO94979 1220 aaKnown RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 APOC2P02655 101 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 TMEM253P0C7T8 217 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms