RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TCF7L2	Q9NQB0	619 aa		19.37	■□□□□ 0.69
CD44-222	ENST00000526025	AIG1	Q9NVV5	245 aa		19.37	■□□□□ 0.69
CD44-222	ENST00000526025	FAM53C	Q9NYF3	392 aa		19.37	■□□□□ 0.69
CD44-222	ENST00000526025	PCDHGB7	Q9Y5F8	929 aa		19.37	■□□□□ 0.69
CD44-222	ENST00000526025	GOLGA8Q	A0A0J9YX86	632 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	GOLGA8O	A6NCC3	632 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	MYO1G	B0I1T2	1018 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	GOLGA8N	F8WBI6	632 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	POLR3G	O15318	223 aa	Predicted RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025	IFI6	P09912	130 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	ALDOC	P09972	364 aa	Known RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025	IDO1	P14902	403 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	TNNI3	P19429	210 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	ITGA3	P26006	1051 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	IDH3A	P50213	366 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	DIO3	P55073	304 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	IRX1	P78414	480 aa	Predicted RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025	GSTA3	Q16772	222 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	H3F3C	Q6NXT2	135 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	CAMKMT	Q7Z624	323 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	APCDD1L	Q8NCL9	501 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	OR1N1	Q8NGS0	311 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	ZNF675	Q8TD23	568 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	RIT1	Q92963	219 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	EXOSC8	Q96B26	276 aa	Known RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025	PPCDC	Q96CD2	204 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	ERP27	Q96DN0	273 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	FBXL20	Q96IG2	436 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	ZNF317	Q96PQ6	595 aa	Predicted RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025	OR52B2	Q96RD2	323 aa		19.36	■□□□□ 0.69
CD44-222	ENST00000526025	PRPF18	Q99633	342 aa	Known RBP	19.36	■□□□□ 0.69
CD44-222	ENST00000526025		A8MUA0	341 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	MKRN2OS	H3BPM6	223 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	ANKRD28	O15084	1053 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	DDAH2	O95865	285 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	IGKV3-11	P04433	115 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	VIM	P08670	466 aa	Known RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	TROVE2	P10155	538 aa	Known RBP eCLIP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	NTS	P30990	170 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	MPI	P34949	423 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	FRK	P42685	505 aa	Predicted RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	MRPL19	P49406	292 aa	Known RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	CCL11	P51671	97 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	LSM12	Q3MHD2	195 aa	Known RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	NXN	Q6DKJ4	435 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	GALNT12	Q8IXK2	581 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	LGI4	Q8N135	537 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	OR8K3	Q8NH51	312 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	CLHC1	Q8NHS4	586 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	SLC2A12	Q8TD20	617 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	THOC3	Q96J01	351 aa	Known RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	RYDEN	Q9NUL5	291 aa	Known RBP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	ATAD3A	Q9NVI7	634 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	FGFR1OP2	Q9NVK5	253 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	19.35	■□□□□ 0.69
CD44-222	ENST00000526025	GPR83	Q9NYM4	423 aa		19.35	■□□□□ 0.69
CD44-222	ENST00000526025		A0A1W2PS29	197 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	GABRR3	A8MPY1	467 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	CDK2AP1	O14519	115 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	AKAP10	O43572	662 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	DNAJB5	O75953	348 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	LRAT	O95237	230 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	SFTPC	P11686	197 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	FEN1	P39748	380 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	CLCN2	P51788	898 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	CLNS1A	P54105	237 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	MAP4K2	Q12851	820 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	DPY19L1	Q2PZI1	675 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	CRB2	Q5IJ48	1285 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	C6orf163	Q5TEZ5	329 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	HPS6	Q86YV9	775 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	ARMC10	Q8N2F6	343 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	LSM14A	Q8ND56	463 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	SUN3	Q8TAQ9	357 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	ZNF721	Q8TF20	911 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	PSMF1	Q92530	271 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	GFM2	Q969S9	779 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	NCLN	Q969V3	563 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	PPWD1	Q96BP3	646 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	TESC	Q96BS2	214 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	CTHRC1	Q96CG8	243 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	COQ8B	Q96D53	544 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	SENP5	Q96HI0	755 aa	Predicted RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	BBS4	Q96RK4	519 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	SMAD5	Q99717	465 aa	Known RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	ARHGAP9	Q9BRR9	750 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	SLC25A23	Q9BV35	468 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	DPY30	Q9C005	99 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	ACSS1	Q9NUB1	689 aa	Predicted RBP	19.34	■□□□□ 0.69
CD44-222	ENST00000526025	COPS7A	Q9UBW8	275 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	LHX6	Q9UPM6	363 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	GPR45	Q9Y5Y3	372 aa		19.34	■□□□□ 0.69
CD44-222	ENST00000526025	MYOCOS	A0A1B0GUC4	107 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	MASP2	O00187	686 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	UBD	O15205	165 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	ALPP	P05187	535 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	ITGAM	P11215	1152 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	NT5E	P21589	574 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	SOX11	P35716	441 aa		19.33	■□□□□ 0.68
CD44-222	ENST00000526025	FUT7	Q11130	342 aa		19.33	■□□□□ 0.68

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