RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 SPTA1P02549 2419 aa20.47■□□□□ 0.87
VEGFA-217ENST00000518538 OR5H15A6NDH6 313 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 GABRR3A8MPY1 467 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 CDK2AP1O14519 115 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 ERAL1O75616 437 aaKnown RBP20.46■□□□□ 0.87
VEGFA-217ENST00000518538 IGKV3-11P04433 115 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 PORP16435 677 aaPredicted RBP20.46■□□□□ 0.87
VEGFA-217ENST00000518538 TNFSF10P50591 281 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 ZNF169Q14929 603 aaPredicted RBP20.46■□□□□ 0.87
VEGFA-217ENST00000518538 TTMPQ5BVD1 217 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 HSDL2Q6YN16 418 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 KIRREL3Q8IZU9 778 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 GOLGA6L1Q8N7Z2 621 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 ZNF781Q8N8C0 355 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 CATSPER1Q8NEC5 780 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 OR8K3Q8NH51 312 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.46■□□□□ 0.872e-10■■■■■ 37.7
VEGFA-217ENST00000518538 FCRL1Q96LA6 429 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 EHD3Q9NZN3 535 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 HAO1Q9UJM8 370 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 UTS2RQ9UKP6 389 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 TMED5Q9Y3A6 229 aa20.46■□□□□ 0.87
VEGFA-217ENST00000518538 FCHO1O14526 889 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 PRKNO60260 465 aaPredicted RBP20.45■□□□□ 0.86
VEGFA-217ENST00000518538 SKAP2O75563 359 aaPredicted RBP20.45■□□□□ 0.86
VEGFA-217ENST00000518538 F10P00742 488 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 CSNK2A2P19784 350 aaPredicted RBP20.45■□□□□ 0.86
VEGFA-217ENST00000518538 BST1Q10588 318 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 ZNF750Q32MQ0 723 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 IKBIPQ70UQ0 350 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 THAP3Q8WTV1 239 aaPredicted RBP20.45■□□□□ 0.86
VEGFA-217ENST00000518538 PPP3R2Q96LZ3 170 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 CNPPD1Q9BV87 410 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 CXorf21Q9HAI6 301 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 PFDN4Q9NQP4 134 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 PCDHGA10Q9Y5H3 936 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 ZNF780BQ9Y6R6 833 aa20.45■□□□□ 0.86
VEGFA-217ENST00000518538 TRAV17A0A0B4J275 112 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TTLL8A6PVC2 850 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 ATP1B1P05026 303 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 DDCP20711 480 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 FEN1P39748 380 aaKnown RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 RPL14P50914 215 aaKnown RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 ERVK-8P63133 956 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 RPL38P63173 70 aaKnown RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TLE1Q04724 770 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TUBA3CQ13748 450 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 ZNF267Q14586 743 aaPredicted RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 GALNTL6Q49A17 601 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 RFTN2Q52LD8 501 aaPredicted RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 FAM71E1Q6IPT2 247 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TUBA3EQ6PEY2 450 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TRIM42Q8IWZ5 723 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 GALNT12Q8IXK2 581 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 SAMD14Q8IZD0 417 aaPredicted RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 CDC26Q8NHZ8 85 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 RAB3IL1Q8TBN0 382 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 CNRIP1Q96F85 164 aaPredicted RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 C3orf30Q96M34 536 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 ZNF681Q96N22 645 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 UTP23Q9BRU9 249 aaKnown RBP20.44■□□□□ 0.86
VEGFA-217ENST00000518538 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.44■□□□□ 0.862e-10■■□□□ 11.8
VEGFA-217ENST00000518538 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.44■□□□□ 0.869e-15■■□□□ 12.4
VEGFA-217ENST00000518538 ERVK-19Q9WJR5 959 aa20.44■□□□□ 0.86
VEGFA-217ENST00000518538 TMEM200CA6NKL6 621 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 HMGB1P1B2RPK0 211 aaPredicted RBP20.43■□□□□ 0.86
VEGFA-217ENST00000518538 HRKO00198 91 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 SASH3O75995 380 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 PLA2G2AP14555 144 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 NT5EP21589 574 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 RNF4P78317 190 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 C2orf80Q0P641 193 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 ATP6AP1LQ52LC2 224 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 C6orf163Q5TEZ5 329 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 LRRC25Q8N386 305 aaPredicted RBP20.43■□□□□ 0.86
VEGFA-217ENST00000518538 OR5L2Q8NGL0 311 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 DOK4Q8TEW6 326 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 EXOSC8Q96B26 276 aaKnown RBP20.43■□□□□ 0.86
VEGFA-217ENST00000518538 C19orf60Q96EN9 201 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 MYOTQ9UBF9 498 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 CFAP46Q8IYW2 2715 aa20.43■□□□□ 0.86
VEGFA-217ENST00000518538 ITGA10O75578 1167 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 SDC1P18827 310 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 TACR1P25103 407 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 TRHRP34981 398 aaPredicted RBP20.42■□□□□ 0.86
VEGFA-217ENST00000518538 CD96P40200 585 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 MLLT10P55197 1068 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 FUT7Q11130 342 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 ATG16L1Q676U5 607 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 FAM180BQ6P0A1 224 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 SUN3Q8TAQ9 357 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 NUBPLQ8TB37 319 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 TRIM45Q9H8W5 580 aaPredicted RBP20.42■□□□□ 0.86
VEGFA-217ENST00000518538 MIEF1Q9NQG6 463 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 SLC35C2Q9NQQ7 365 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 GIMAP4Q9NUV9 329 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 THAP1Q9NVV9 213 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 ANKRD10Q9NXR5 420 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 ENTPD4Q9Y227 616 aa20.42■□□□□ 0.86
VEGFA-217ENST00000518538 YARS2Q9Y2Z4 477 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms