RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PRPS2P11908 318 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 PCSK2P16519 638 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 KLRB1Q12918 225 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 PDCD2Q16342 344 aaPredicted RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 C6orf136Q5SQH8 315 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 C6orf163Q5TEZ5 329 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 RPS19BP1Q86WX3 136 aaKnown RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 CRLF3Q8IUI8 442 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 ARFGAP2Q8N6H7 521 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 OR8K3Q8NH51 312 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 SLC2A12Q8TD20 617 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 NCLNQ969V3 563 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 PPWD1Q96BP3 646 aaKnown RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 FBXL20Q96IG2 436 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 OR8D2Q9GZM6 311 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 RNF32Q9H0A6 362 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 MIEF1Q9NQG6 463 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 SLC35C2Q9NQQ7 365 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 RYDENQ9NUL5 291 aaKnown RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 EIF3LQ9Y262 564 aaKnown RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 BSNQ9UPA5 3926 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 TRBV11-1A0A0K0K1C0 115 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ATP6AP2A0A1C7CYW4 349 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 DYTNA2CJ06 578 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 K7EM74 188 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ATP6AP2O75787 350 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 PDGFAP04085 211 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ATP1B1P05026 303 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 BCKDHAP12694 445 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 SDC1P18827 310 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 MPIP34949 423 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 RPL3P39023 403 aaKnown RBP13.29□□□□□ -0.28
NUP54-216ENST00000514901 EMX2Q04743 252 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ACER2Q5QJU3 275 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 HSDL2Q6YN16 418 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 LINC00696Q6ZRV3 163 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 R3HCC1LQ7Z5L2 792 aaKnown RBP13.29□□□□□ -0.28
NUP54-216ENST00000514901 GALNT12Q8IXK2 581 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 MMP21Q8N119 569 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ARMC10Q8N2F6 343 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 LRRC25Q8N386 305 aaPredicted RBP13.29□□□□□ -0.28
NUP54-216ENST00000514901 FNDC5Q8NAU1 212 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 OR5L2Q8NGL0 311 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 CDC26Q8NHZ8 85 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 PIWIL2Q8TC59 973 aaKnown RBP13.29□□□□□ -0.28
NUP54-216ENST00000514901 ZNF721Q8TF20 911 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 HAS2Q92819 552 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ZNF764Q96H86 408 aaPredicted RBP13.29□□□□□ -0.28
NUP54-216ENST00000514901 C7orf26Q96N11 449 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ZNF681Q96N22 645 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 AKTIPQ9H8T0 292 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 MEAF6Q9HAF1 191 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 CXorf21Q9HAI6 301 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ANAPC2Q9UJX6 822 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 MAPRE3Q9UPY8 281 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 ENTPD4Q9Y227 616 aa13.29□□□□□ -0.28
NUP54-216ENST00000514901 OR6C76A6NM76 312 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 FCHO1O14526 889 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 TBX19O60806 448 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 IGKV3-11P04433 115 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 NT5EP21589 574 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 TACR1P25103 407 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 FEN1P39748 380 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 ERVK-8P63133 956 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 MAP4K2Q12851 820 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 NFATC3Q12968 1075 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 ZNF267Q14586 743 aaPredicted RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 CEBPEQ15744 281 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 IL23RQ5VWK5 629 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 B3GNTL1Q67FW5 361 aaPredicted RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 TICAM1Q8IUC6 712 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 FAM9CQ8IZT9 166 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 KIF2BQ8N4N8 673 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 RBMXL3Q8N7X1 1067 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 OR7G1Q8NGA0 311 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 CKAP2Q8WWK9 683 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 EXOSC8Q96B26 276 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 ERP27Q96DN0 273 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 MTERF3Q96E29 417 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 CNRIP1Q96F85 164 aaPredicted RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 MAGEB18Q96M61 343 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 BBS4Q96RK4 519 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 CNPPD1Q9BV87 410 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 NUF2Q9BZD4 464 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 CDCP1Q9H5V8 836 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 REEP4Q9H6H4 257 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 ASIC5Q9NY37 505 aa13.28□□□□□ -0.28
NUP54-216ENST00000514901 NOP53Q9NZM5 478 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 RALYQ9UKM9 306 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 TNRC6AQ8NDV7 1962 aaKnown RBP13.28□□□□□ -0.28
NUP54-216ENST00000514901 SMG1Q96Q15 3661 aaKnown RBP13.27□□□□□ -0.28
NUP54-216ENST00000514901 BCAS2O75934 225 aaPredicted RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 SLITRK5O94991 958 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 JUNP05412 331 aaKnown RBP13.27□□□□□ -0.29
NUP54-216ENST00000514901 KITP10721 976 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 LBPP18428 481 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 MLF1P58340 268 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 ARG2P78540 354 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 FUT7Q11130 342 aa13.27□□□□□ -0.29
NUP54-216ENST00000514901 TLR1Q15399 786 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms