RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RPL36Q9Y3U8 105 aaKnown RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 SNX11Q9Y5W9 270 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 A0A0B4J293 547 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 C2orf92A0A1B0GVN3 265 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 CD8B2A6NJW9 211 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PRR23D1E9PI22 279 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 ARHGEF15O94989 841 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 CH25HO95992 272 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 IFNA14P01570 189 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PRR23D2P0DMB1 279 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 CD8BP10966 210 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 HNMTP50135 292 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 CTBP2P56545 445 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RRAS2P62070 204 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 RPS25P62851 125 aaKnown RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 CDK6Q00534 326 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 GAB1Q13480 694 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 NAE1Q13564 534 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 TEAD4Q15561 434 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RPS26P11Q5JNZ5 115 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 CLEC12AQ5QGZ9 265 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 DCST1Q5T197 706 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 IER5LQ5T953 404 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 FRMPD2BQ6IN97 320 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 IL20RBQ6UXL0 311 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RNF165Q6ZSG1 346 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RFLNAQ6ZTI6 216 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 DDX53Q86TM3 631 aaKnown RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 RNF31Q96EP0 1072 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 OTUB1Q96FW1 271 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 HYLS1Q96M11 299 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 MAPKAP1Q9BPZ7 522 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 GABARAPL3Q9BY60 117 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 RWDD3Q9Y3V2 267 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PIKFYVEQ9Y2I7 2098 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 TRBV5-3A0A0A0MS03 114 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ZNF670-ZNF695F2Z2N8 137 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 LEFTY2O00292 366 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 GRM6O15303 877 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 C1QBP02746 253 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 SCG5P05408 212 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 SYPP08247 313 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 POLR2CP19387 275 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 ALAS2P22557 587 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 CPN2P22792 545 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PTSQ03393 145 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ZNF91Q05481 1191 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 ANGPT1Q15389 498 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 C11orf96Q7Z7L8 435 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.18□□□□□ -0.94
VCAN-210ENST00000513960 RNF170Q96K19 258 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 C17orf62Q9BQA9 187 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 SLC12A9Q9BXP2 914 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 MIEF1Q9NQG6 463 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PAK6Q9NQU5 681 aaPredicted RBP9.18□□□□□ -0.94
VCAN-210ENST00000513960 SEMA3GQ9NS98 782 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 PLCXD1Q9NUJ7 323 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 FKBP14Q9NWM8 211 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 EXTL2Q9UBQ6 330 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 B4GALT6Q9UBX8 382 aa9.18□□□□□ -0.94
VCAN-210ENST00000513960 MPZL2O60487 215 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 FKTNO75072 461 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 HRGP04196 525 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 AMD1P17707 334 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 NNMTP40261 264 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ETV6P41212 452 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 GZMMP51124 257 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SLC7A9P82251 487 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 MTFR2Q6P444 385 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 IDO2Q6ZQW0 420 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 RRM2BQ7LG56 351 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 UXS1Q8NBZ7 420 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TOR1AIP2Q8NFQ8 470 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ZFP3Q96NJ6 502 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SMG9Q9H0W8 520 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 ABCG5Q9H222 651 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 GPBP1L1Q9HC44 474 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 SCN5AQ14524 2016 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 AGAP14A8MT82 685 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 PLA2G10O15496 165 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ZNF821O75541 412 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 RFPL3O75679 317 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SLC22A5O76082 557 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRAPPC2P0DI81 140 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRAPPC2BP0DI82 140 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ATP1B2P14415 290 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 CELP19835 753 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 LHCGRP22888 699 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 AOAHP28039 575 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SYTL3Q4VX76 610 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 GARNL3Q5VVW2 1013 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 BICRALQ6AI39 1079 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ADNP2Q6IQ32 1131 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 RASSF6Q6ZTQ3 369 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 OR52E4Q8NGH9 312 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SMG7Q92540 1137 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 SLC9A6Q92581 669 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 RAB8BQ92930 207 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 C7orf34Q96L11 122 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 PIP5K1AQ99755 562 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms