RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 C7orf34Q96L11 122 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ZFP42Q96MM3 310 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 UROC1Q96N76 676 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF285Q96NJ3 590 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 SERPINB11Q96P15 392 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 MTERF1Q99551 399 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 WFDC6Q9BQY6 131 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 H2AFJQ9BTM1 129 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TAPBPLQ9BX59 468 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 OSGEPL1Q9H4B0 414 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 FZD4Q9ULV1 537 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ASB4Q9Y574 426 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 RBBP6Q7Z6E9 1792 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ADAMTSL3P82987 1691 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 PRR23D1E9PI22 279 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ARNTLO00327 626 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 SAP18O00422 153 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 VPS4BO75351 444 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 PAGE1O75459 146 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ECDO95905 644 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TBX18O95935 607 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TFP02787 698 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TCRBP04435 133 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 IL6P05231 212 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 EIF4EP06730 217 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 PRR23D2P0DMB1 279 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 LAMP1P11279 417 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 MAPK1P28482 360 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 XKP51811 444 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 CDC42P60953 191 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 KCNJ10P78508 379 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ADAM15Q13444 863 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 RBM39Q14498 530 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 COL28A1Q2UY09 1125 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 METTL11BQ5VVY1 283 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 DCAF15Q66K64 600 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 SLC25A25Q6KCM7 469 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 RGS7BPQ6MZT1 257 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 KIAA1841Q6NSI8 718 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF730Q6ZMV8 503 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ETV3LQ6ZN32 361 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 RNF180Q86T96 592 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 LAPTM4BQ86VI4 370 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 NR2C2APQ86WQ0 139 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 RASGRP3Q8IV61 690 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 SIAH3Q8IW03 269 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ADGRF3Q8IZF5 1079 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 OR6K2Q8NGY2 324 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 PHOSPHO1Q8TCT1 267 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 EDARADDQ8WWZ3 215 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 HMCESQ96FZ2 354 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 LRIG1Q96JA1 1093 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 CCDC115Q96NT0 180 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 FCRL5Q96RD9 977 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TREX2Q9BQ50 279 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 AARSD1Q9BTE6 412 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 SLC6A15Q9H2J7 730 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 CHRDQ9H2X0 955 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 FZD8Q9H461 694 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF275Q9NSD4 429 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TAS2R3Q9NYW6 316 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TNFRSF10DQ9UBN6 386 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF70Q9UC06 446 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 PFDN2Q9UHV9 154 aa6.91□□□□□ -1.3
LIMCH1-207ENST00000508466 TRBV4-1A0A0J9YWV2 114 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 HYKKA2RU49 373 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OR6C68A6NDL8 312 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 MEIS3P2A8K0S8 358 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 STAU1O95793 577 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 PDYNP01213 254 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF286BP0CG31 522 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OR12D1P0DN82 309 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 HK1P19367 917 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 FPR3P25089 353 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 GJA5P36382 358 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 VEGFCP49767 419 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 DGCR2P98153 550 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 COL19A1Q14993 1142 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SEC23BQ15437 767 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 TARBP2Q15633 366 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF628Q5EBL2 1059 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 CEACAM20Q6UY09 585 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SCN4BQ8IWT1 228 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 DUSP18Q8NEJ0 188 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 BPIFCQ8NFQ6 507 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ZDHHC1Q8WTX9 485 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 MRPS24Q96EL2 167 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OR1F2PQ96R84 312 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 FAIM2Q9BWQ8 316 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 UNKLQ9H9P5 680 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 PCDHGC4Q9Y5F7 938 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 PCDHGB3Q9Y5G1 929 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ASCC3Q8N3C0 2202 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 LOXHD1Q8IVV2 1947 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 MROH6A6NGR9 719 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SULT1C2O00338 296 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SCAMP1O15126 338 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OR10H3O60404 316 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 LDOC1O95751 146 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ITPKAP23677 461 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms