RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TRIM4Q9C037 500 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CAB39LQ9H9S4 337 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 PARVBQ9HBI1 364 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 SYTL2Q9HCH5 934 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 MRPS30Q9NP92 439 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 SERTAD4Q9NUC0 356 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 TXLNGQ9NUQ3 528 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 UTP6Q9NYH9 597 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 WWOXQ9NZC7 414 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 VSX1Q9NZR4 365 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 TAC3Q9UHF0 121 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 MAN2B2Q9Y2E5 1009 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 UTP11Q9Y3A2 253 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 PTRH2Q9Y3E5 179 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 PCDHGA6Q9Y5G7 932 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 AP1M2Q9Y6Q5 423 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 PCM1Q15154 2024 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 BSNQ9UPA5 3926 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 A0A0A6YYC8 382 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 FEZF1A0PJY2 475 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 OR2A25A4D2G3 310 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 OR2W5A6NFC9 320 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 HMGB1P1B2RPK0 211 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 C9J4A7 227 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 E7ESA3 106 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 I3L1I5 382 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 P2RX6O15547 441 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SLC28A2O43868 658 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 DNAJB6O75190 326 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SNRNP200O75643 2136 aaKnown RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 GUCA1CO95843 209 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 UMODP07911 640 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 HBQ1P09105 142 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 RAB40ALP0C0E4 278 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 PF4V1P10720 104 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ERGP11308 486 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CDH1P12830 882 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ENO3P13929 434 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 PLA2G2AP14555 144 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 NPPBP16860 134 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 IMPA1P29218 277 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 HSD17B2P37059 387 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 RGS4P49798 205 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 POU6F2P78424 691 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 SRSF2Q01130 221 aaKnown RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 CALCOCO2Q13137 446 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ATP1A4Q13733 1029 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ARHGAP19Q14CB8 494 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 EFTUD2Q15029 972 aaKnown RBP eCLIP4.29□□□□□ -1.72
NUP54-206ENST00000508465 NCF4Q15080 339 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ZRSR2Q15696 482 aaKnown RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 IGFBP7Q16270 282 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SYT16Q17RD7 645 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 PRTGQ2VWP7 1150 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 FBXO48Q5FWF7 155 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CEP78Q5JTW2 689 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ICE2Q659A1 982 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 FAAH2Q6GMR7 532 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 RHBDD2Q6NTF9 364 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 TLDC1Q6P9B6 456 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 AGTRAPQ6RW13 159 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 KIAA0408Q6ZU52 694 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ASB18Q6ZVZ8 466 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SLC29A4Q7RTT9 530 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ZNF551Q7Z340 670 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 SYVN1Q86TM6 617 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CNTN4Q8IWV2 1026 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CTAGE3PQ8IX95 158 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 LMNTD2Q8IXW0 634 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CSNK1A1LQ8N752 337 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 PPM1NQ8N819 430 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 BBOF1Q8ND07 529 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ZNF740Q8NDX6 193 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 IL17RDQ8NFM7 739 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 GABPB2Q8TAK5 448 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 C9orf43Q8TAL5 461 aaPredicted RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 CABS1Q96KC9 395 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 TSNARE1Q96NA8 513 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 LRFN5Q96NI6 719 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CATSPER2Q96P56 530 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 OR4K3Q96R72 315 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 RAB11FIP5Q9BXF6 653 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CHRNA10Q9GZZ6 450 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ING2Q9H160 280 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SLC25A18Q9H1K4 315 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CUTCQ9NTM9 273 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 ARL15Q9NXU5 204 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 JKAMPQ9P055 326 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SPATA7Q9P0W8 599 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 LUZP4Q9P127 313 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CTSFQ9UBX1 484 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 CDC23Q9UJX2 597 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 SNX7Q9UNH6 387 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 POLHQ9Y253 713 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 TP53TG5Q9Y2B4 290 aa4.29□□□□□ -1.72
NUP54-206ENST00000508465 MRPS2Q9Y399 296 aaKnown RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 UTP20O75691 2785 aaKnown RBP4.29□□□□□ -1.72
NUP54-206ENST00000508465 ANKRD12Q6UB98 2062 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 FASNP49327 2511 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZNF462Q96JM2 2506 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms