RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 OR5K2Q8NHB8 316 aa17■□□□□ 0.31
VIM-206ENST00000487938 TMEM80Q96HE8 168 aa17■□□□□ 0.31
VIM-206ENST00000487938 TRNT1Q96Q11 434 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 TREX2Q9BQ50 279 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 ASPNQ9BXN1 380 aa17■□□□□ 0.31
VIM-206ENST00000487938 OR51I1Q9H343 314 aa17■□□□□ 0.31
VIM-206ENST00000487938 FZD3Q9NPG1 666 aa17■□□□□ 0.31
VIM-206ENST00000487938 CTPS2Q9NRF8 586 aa17■□□□□ 0.31
VIM-206ENST00000487938 TVP23BQ9NYZ1 205 aa17■□□□□ 0.31
VIM-206ENST00000487938 CXXC1Q9P0U4 656 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 POU2F3Q9UKI9 436 aa17■□□□□ 0.31
VIM-206ENST00000487938 RBMX2Q9Y388 322 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 GLOD5A6NK44 160 aa17■□□□□ 0.31
VIM-206ENST00000487938 FAAHO00519 579 aa17■□□□□ 0.31
VIM-206ENST00000487938 HOXC11O43248 304 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 PRKRAO75569 313 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 SCG5P05408 212 aa17■□□□□ 0.31
VIM-206ENST00000487938 CD72P21854 359 aa17■□□□□ 0.31
VIM-206ENST00000487938 CXCR2P25025 360 aa17■□□□□ 0.31
VIM-206ENST00000487938 GJA8P48165 433 aa17■□□□□ 0.31
VIM-206ENST00000487938 ELAVL3Q14576 367 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 TMEM52BQ4KMG9 183 aa17■□□□□ 0.31
VIM-206ENST00000487938 ATAD3BQ5T9A4 648 aa17■□□□□ 0.31
VIM-206ENST00000487938 CCBE1Q6UXH8 406 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 CCDC190Q86UF4 302 aa17■□□□□ 0.31
VIM-206ENST00000487938 FAM20CQ8IXL6 584 aa17■□□□□ 0.31
VIM-206ENST00000487938 ETFBKMTQ8IXQ9 262 aa17■□□□□ 0.31
VIM-206ENST00000487938 SPPL3Q8TCT6 385 aa17■□□□□ 0.31
VIM-206ENST00000487938 ZBED6CLQ96FA7 236 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 CEP19Q96LK0 163 aa17■□□□□ 0.31
VIM-206ENST00000487938 SLC6A18Q96N87 628 aa17■□□□□ 0.31
VIM-206ENST00000487938 ZNF607Q96SK3 696 aa17■□□□□ 0.31
VIM-206ENST00000487938 SDHCQ99643 169 aaPredicted RBP17■□□□□ 0.31
VIM-206ENST00000487938 MACROD1Q9BQ69 325 aa17■□□□□ 0.31
VIM-206ENST00000487938 YIPF4Q9BSR8 244 aa17■□□□□ 0.31
VIM-206ENST00000487938 PELI2Q9HAT8 420 aa17■□□□□ 0.31
VIM-206ENST00000487938 NEUROD4Q9HD90 331 aa17■□□□□ 0.31
VIM-206ENST00000487938 CFL2Q9Y281 166 aa17■□□□□ 0.31
VIM-206ENST00000487938 INSL6Q9Y581 213 aa17■□□□□ 0.31
VIM-206ENST00000487938 CKAP5Q14008 2032 aa17■□□□□ 0.31
VIM-206ENST00000487938 A0A1W2PPV9 198 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 RGS5O15539 181 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 SSX4O60224 188 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 PDE9AO76083 593 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 PIPP12273 146 aaPredicted RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 P2RY2P41231 377 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 PRKAG1P54619 331 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 TOR1AIP1Q5JTV8 583 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 RGMAQ96B86 450 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 PPP1R16AQ96I34 528 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 TSSK6Q9BXA6 273 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 IL23AQ9NPF7 189 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 DEC1Q9P2X7 70 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 A4GNTQ9UNA3 340 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 LSM2Q9Y333 95 aaKnown RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 GOLGA4Q13439 2230 aaKnown RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 IGLON5A6NGN9 336 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 LOC110117498-PIK3R3F6TDL0 507 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 NDUFS4O43181 175 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 TLX2O43763 284 aaPredicted RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 CYP7B1O75881 506 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 NR2F1P10589 423 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 ALPPL2P10696 532 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 TNFSF8P32971 234 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 GPC1P35052 558 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 TGM4P49221 684 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 CLCNKAP51800 687 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 RHAGQ02094 409 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 SPHARQ15513 63 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 C12orf73Q69YU5 71 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 PODNL1Q6PEZ8 512 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 LRRTM4Q86VH4 590 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 NUDT13Q86X67 352 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 MEX3DQ86XN8 651 aaKnown RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 TRMT61AQ96FX7 289 aaKnown RBP16.99■□□□□ 0.31
VIM-206ENST00000487938 COX14Q96I36 57 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 MENTQ9BUN1 341 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 BARHL1Q9BZE3 327 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 GLIPR2Q9H4G4 154 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 WASH6PQ9NQA3 447 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 WDR37Q9Y2I8 494 aa16.99■□□□□ 0.31
VIM-206ENST00000487938 KIF26AQ9ULI4 1882 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 LATO43561 262 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 NME6O75414 186 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 OXSR1O95747 527 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 PTTG1O95997 202 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 TP53P04637 393 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 CHRM5P08912 532 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 ERGP11308 486 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 BMPR1AP36894 532 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 FRKP42685 505 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 ZNF91Q05481 1191 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 NCF4Q15080 339 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 METRNLQ641Q3 311 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 AKAP14Q86UN6 197 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 CELF2-AS1Q8N7Q2 184 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 C12orf76Q8N812 135 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 LINC01555Q8NAE3 123 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 QRFPRQ96P65 431 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 TEFMQ96QE5 360 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms