RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 PRPS2P11908 318 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 NR1D1P20393 614 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 NT5EP21589 574 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 ARRB2P32121 409 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 MPIP34949 423 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 HPCAL1P37235 193 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 PPP2R2AP63151 447 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 KIAA0040Q15053 153 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 PDCD2Q16342 344 aaPredicted RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 GALNTL6Q49A17 601 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 SLC6A19Q695T7 634 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 Q6ZS92 163 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 Q6ZSR9 355 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 SLC29A4Q7RTT9 530 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 R3HCC1LQ7Z5L2 792 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 VWA5B2Q8N398 1253 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF781Q8N8C0 355 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 FNDC5Q8NAU1 212 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 OR7G1Q8NGA0 311 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 NUBPLQ8TB37 319 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 LRRC8CQ8TDW0 803 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 UTP23Q9BRU9 249 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 CNPPD1Q9BV87 410 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 CXorf21Q9HAI6 301 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 MED4Q9NPJ6 270 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 SLC35C2Q9NQQ7 365 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 INTS9Q9NV88 658 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 TAS2R7Q9NYW3 318 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 NOP53Q9NZM5 478 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 CES1P1Q9UKY3 287 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 EIF3LQ9Y262 564 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 PTGDR2Q9Y5Y4 395 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 PCSK5Q92824 1860 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 ATP8B1O43520 1251 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 BCAS2O75934 225 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 DDAH2O95865 285 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 IGKV3-11P04433 115 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 MLF1P58340 268 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 PSPHP78330 225 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 C2orf80Q0P641 193 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF169Q14929 603 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 FAM71E1Q6IPT2 247 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 RNF111Q6ZNA4 994 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 PRICKLE2Q7Z3G6 844 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 PTRH1Q86Y79 214 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 CRLF3Q8IUI8 442 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 DND1Q8IYX4 353 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 ARFGAP2Q8N6H7 521 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 NATD1Q8N6N6 113 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 RBMXL3Q8N7X1 1067 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 OR2T11Q8NH01 316 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 ZFP28Q8NHY6 868 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 MTERF3Q96E29 417 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 SENP5Q96HI0 755 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 BBS4Q96RK4 519 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 SORT1Q99523 831 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 PRPF18Q99633 342 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 RALYQ9UKM9 306 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 YARS2Q9Y2Z4 477 aaKnown RBP13.63□□□□□ -0.23
LIMS3-205ENST00000487150 SCN3AQ9NY46 2000 aa13.63□□□□□ -0.23
LIMS3-205ENST00000487150 IGSF10Q6WRI0 2623 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 GABRR3A8MPY1 467 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 K7EM74 188 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 HDAC3O15379 428 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 SUV39H1O43463 412 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 TBX19O60806 448 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 PEX11AO75192 247 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 C1QL1O75973 258 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 SASH3O75995 380 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 WDPCPO95876 746 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 IFI6P09912 130 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 SDC1P18827 310 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 TRHRP34981 398 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 CYB561P49447 251 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 TNFSF10P50591 281 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 SSR4P51571 173 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 GPR143P51810 404 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ERVK-8P63133 956 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 OC90Q02509 493 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF267Q14586 743 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 RFTN2Q52LD8 501 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF605Q86T29 641 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 BEST3Q8N1M1 668 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 KIF2BQ8N4N8 673 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 C17orf47Q8NEP4 570 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 SLC22A8Q8TCC7 542 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF675Q8TD23 568 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ZNF721Q8TF20 911 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 TMEM125Q96AQ2 219 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 EXOSC8Q96B26 276 aaKnown RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 PPCDCQ96CD2 204 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ZBED6CLQ96FA7 236 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-205ENST00000487150 C5orf34Q96MH7 638 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 C7orf26Q96N11 449 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 CDCP1Q9H5V8 836 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 REEP4Q9H6H4 257 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ATAD3AQ9NVI7 634 aa13.62□□□□□ -0.23
LIMS3-205ENST00000487150 ASIC5Q9NY37 505 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms