RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 LAG3P18627 525 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 GDI1P31150 447 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SDC2P34741 201 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SLC6A11P48066 632 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 ARHGDIBP52566 201 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 STXBP1P61764 594 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TIAL1Q01085 375 aaKnown RBP eCLIP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF267Q14586 743 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 GFOD2Q3B7J2 385 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 DEFB134Q4QY38 66 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TPRG1Q6ZUI0 275 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 KLBQ86Z14 1044 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 PARP16Q8N5Y8 322 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 DPP10Q8N608 796 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 MRPL43Q8N983 215 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 FAM98AQ8NCA5 519 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 OR13F1Q8NGS4 319 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TMEM174Q8WUU8 243 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 PMM1Q92871 262 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 FGF13Q92913 245 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 COQ8BQ96D53 544 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 UROC1Q96N76 676 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 MRPL9Q9BYD2 267 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 NMNAT1Q9HAN9 279 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 DCAF13Q9NV06 445 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 KCMF1Q9P0J7 381 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 USP36Q9P275 1121 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SH2B3Q9UQQ2 575 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 RUVBL1Q9Y265 456 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 PCDHGB3Q9Y5G1 929 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 A0A0B4J203 849 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 A0A1W2PQ72 361 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 A0A1W2PQL4 384 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TRIM64CA6NLI5 447 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 M0QZQ0 153 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 STX16O14662 325 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 HAT1O14929 419 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SYN3O14994 580 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 KHNYNO15037 678 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 KLHL18O94889 574 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 POP4O95707 220 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TSPAN12O95859 305 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 PDGFBP01127 241 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 GASTP01350 101 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 OPN1LWP04000 364 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 RPS3P23396 243 aaKnown RBP eCLIP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 APEX1P27695 318 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 CLDN12P56749 244 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 DCDC1P59894 354 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 IFITM3Q01628 133 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 MAD2L1BPQ15013 274 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 DPY19L1Q2PZI1 675 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 ARHGAP15Q53QZ3 475 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 CMPK2Q5EBM0 449 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 RBM48Q5RL73 367 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SFRP4Q6FHJ7 346 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TANGO2Q6ICL3 276 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 NIPAL1Q6NVV3 410 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 CDC73Q6P1J9 531 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 ENTHD1Q8IYW4 607 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 METTL4Q8N3J2 472 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 GRPEL2Q8TAA5 225 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 BPIFB1Q8TDL5 484 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 CSGALNACT1Q8TDX6 532 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 ADAMTS15Q8TE58 950 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 USP7Q93009 1102 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 PGAP3Q96FM1 320 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 C16orf58Q96GQ5 468 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 MSLNLQ96KJ4 702 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 FAIM2Q9BWQ8 316 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 SLC6A16Q9GZN6 736 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TAS2R9Q9NYW1 312 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 TDRD6O60522 2096 aaKnown RBP4.75□□□□□ -1.65
CCDC39-204ENST00000476379 WDR81Q562E7 1941 aa4.75□□□□□ -1.65
CCDC39-204ENST00000476379 A0A1W2PQ09 198 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 A0A1W2PS29 197 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 PLD2O14939 933 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 SLC22A2O15244 555 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 SLC22A1O15245 554 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 FGF4P08620 206 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 SLC2A2P11168 524 aaPredicted RBP4.74□□□□□ -1.65
CCDC39-204ENST00000476379 HOXB3P14651 431 aaPredicted RBP4.74□□□□□ -1.65
CCDC39-204ENST00000476379 HPGDP15428 266 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 HOXB8P17481 243 aaPredicted RBP4.74□□□□□ -1.65
CCDC39-204ENST00000476379 IL1RNP18510 177 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 CD9P21926 228 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 KELP23276 732 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 AHRP35869 848 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 ADH7P40394 386 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 RPS27P42677 84 aaKnown RBP4.74□□□□□ -1.65
CCDC39-204ENST00000476379 DGKGP49619 791 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 ISL1P61371 349 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 AP1S1P61966 158 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 BTN3A2P78410 334 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 PPP2R2BQ00005 443 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 SLAMF1Q13291 335 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 RGNQ15493 299 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 WSCD2Q2TBF2 565 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 BTBD16Q32M84 506 aa4.74□□□□□ -1.65
CCDC39-204ENST00000476379 FLYWCH1Q4VC44 716 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms