RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CDH13P55290 713 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF267Q14586 743 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 PIGGQ5H8A4 983 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 FAM219BQ5XKK7 198 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 RNF111Q6ZNA4 994 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 GK5Q6ZS86 529 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 MILR1Q7Z6M3 343 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 GOLM1Q8NBJ4 401 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 NUBPLQ8TB37 319 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 FAM57AQ8TBR7 257 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 SLC22A8Q8TCC7 542 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 PELOQ9BRX2 385 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 MRPL1Q9BYD6 325 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 TTTY12Q9BZ98 90 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 ELOVL6Q9H5J4 265 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 SACM1LQ9NTJ5 587 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 PPT2Q9UMR5 302 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 CELSR1Q9NYQ6 3014 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A1B0GTL3 188 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 A0A1W2PS29 197 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 E9PLN8 166 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 PGRMC2O15173 223 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 P04436 131 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 KLK1P06870 262 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 ABHD2P08910 425 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SBK3P0C264 359 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 RHOXF2BP0C7M4 288 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 CCL3P10147 92 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 CNR1P21554 472 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 GCAP28676 217 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 DNASE1L1P49184 302 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 KRTAP10-9P60411 292 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 MPEG1Q2M385 716 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SPRED3Q2MJR0 410 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 LGSNQ5TDP6 509 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 OR52E8Q6IFG1 317 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 LETMD1Q6P1Q0 360 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 ARHGAP11AQ6P4F7 1023 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM47EQ6ZV65 393 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC29A4Q7RTT9 530 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 IFT20Q8IY31 132 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 EID3Q8N140 333 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 ZNF483Q8TF39 744 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 RIT1Q92963 219 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SGCZQ96LD1 299 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 DMRTA2Q96SC8 542 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 VKORC1Q9BQB6 163 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM173AQ9BQD7 235 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 RHOXF2Q9BQY4 288 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 FARSBQ9NSD9 589 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 ITGB1BP2Q9UKP3 347 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC12A4Q9UP95 1085 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 HCFC1P51610 2035 aa14.52□□□□□ -0.09
CCDC88B-205ENST00000472524 PPP6CO00743 305 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 ADAM10O14672 748 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 RIPK2O43353 540 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 CLDN14O95500 239 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 NADKO95544 446 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 OTCP00480 354 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 PIK3R1P27986 724 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 GGTA1PQ4G0N0 100 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 CCNYL2Q5T2Q4 361 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 PAOXQ6QHF9 649 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 TRMT10CQ7L0Y3 403 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 PAGE2Q7Z2X7 111 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC22A16Q86VW1 577 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 PHF10Q8WUB8 498 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 SELENOMQ8WWX9 145 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 WWTR1Q9GZV5 400 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 PLSCR2Q9NRY7 297 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 TUBA8Q9NY65 449 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 AHSPQ9NZD4 102 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 LIPGQ9Y5X9 500 aa14.51□□□□□ -0.09
CCDC88B-205ENST00000472524 OR4F21O95013 312 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 PDYNP01213 254 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM153BP0C7A2 387 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC35E2P0CK97 266 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 TAC1P20366 129 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SSTR4P31391 388 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 PIGAP37287 484 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 MAGEA5P43359 124 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC37A1P57057 533 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 EBPQ15125 230 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 ZNF791Q3KP31 576 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM153CQ494X1 144 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 C10orf62Q5T681 223 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 NDUFAF5Q5TEU4 345 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 PRAMEF20Q5VT98 475 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 ADGRD1Q6QNK2 874 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 RGS9BPQ6ZS82 235 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 COMMD6Q7Z4G1 85 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 METTL4Q8N3J2 472 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM151AQ8N4L1 468 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM251Q8N6I4 163 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM13CQ8NE31 585 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 TRPC4APQ8TEL6 797 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SDCCAG3Q96C92 435 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 MTBPQ96DY7 904 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SPACA9Q96E40 222 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms