RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 BEST3Q8N1M1 668 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 MGARPQ8TDB4 240 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 ZNF721Q8TF20 911 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 KLHL29Q96CT2 875 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 FBXL20Q96IG2 436 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 SORT1Q99523 831 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 C20orf27Q9GZN8 174 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 ZNF395Q9H8N7 513 aaPredicted RBP14.23□□□□□ -0.13
SDC3-203ENST00000471567 CXorf21Q9HAI6 301 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 SLAMF7Q9NQ25 335 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.23□□□□□ -0.13
SDC3-203ENST00000471567 PLA2G3Q9NZ20 509 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 UTS2RQ9UKP6 389 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 POLR3HQ9Y535 204 aaPredicted RBP14.23□□□□□ -0.13
SDC3-203ENST00000471567 ZNF780BQ9Y6R6 833 aa14.23□□□□□ -0.13
SDC3-203ENST00000471567 SMG1Q96Q15 3661 aaKnown RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 TRAV17A0A0B4J275 112 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 FCHO1O14526 889 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 SLC28A2O43868 658 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 ERAL1O75616 437 aaKnown RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 IGKV3-11P04433 115 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 ATP1B1P05026 303 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 DDCP20711 480 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 TNFSF10P50591 281 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 RPL14P50914 215 aaKnown RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 C2orf80Q0P641 193 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 ZNF169Q14929 603 aaPredicted RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 RFTN2Q52LD8 501 aaPredicted RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 FAM71E1Q6IPT2 247 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 DGAT2L6Q6ZPD8 337 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 PRICKLE2Q7Z3G6 844 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 MMP21Q8N119 569 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 ZNF781Q8N8C0 355 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 Q8NA96 180 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 OR5L2Q8NGL0 311 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 ZNF681Q96N22 645 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 UTP23Q9BRU9 249 aaKnown RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 RYDENQ9NUL5 291 aaKnown RBP14.22□□□□□ -0.13
SDC3-203ENST00000471567 THAP1Q9NVV9 213 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 TAS2R7Q9NYW3 318 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 CSAG2Q9Y5P2 127 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 CPAMD8Q8IZJ3 1885 aa14.22□□□□□ -0.13
SDC3-203ENST00000471567 A0A1W2PS29 197 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 GABRR3A8MPY1 467 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 MAN1A2O60476 641 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 SNNO75324 88 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 SKAP2O75563 359 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 MAPK1P28482 360 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 TRHRP34981 398 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 ERVK-8P63133 956 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 RPL38P63173 70 aaKnown RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 RNF4P78317 190 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 TUBA3CQ13748 450 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 ZNF267Q14586 743 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 ATP6AP1LQ52LC2 224 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 C6orf163Q5TEZ5 329 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 RPUSD3Q6P087 351 aaKnown RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 TUBA3EQ6PEY2 450 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 GALNT12Q8IXK2 581 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 LRRC25Q8N386 305 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 ZNF321PQ8N8H1 164 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 CATSPER1Q8NEC5 780 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 SUN3Q8TAQ9 357 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 NUBPLQ8TB37 319 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 CNRIP1Q96F85 164 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 C3orf30Q96M34 536 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 CNPPD1Q9BV87 410 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.21□□□□□ -0.132e-7■■■■□ 21.4
SDC3-203ENST00000471567 EPN3Q9H201 632 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 ACBD3Q9H3P7 528 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 MANSC1Q9H8J5 431 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 TRIM45Q9H8W5 580 aaPredicted RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 SLC35C2Q9NQQ7 365 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 GIMAP4Q9NUV9 329 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 MYOTQ9UBF9 498 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 ERVK-19Q9WJR5 959 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 YARS2Q9Y2Z4 477 aaKnown RBP14.21□□□□□ -0.13
SDC3-203ENST00000471567 PCDHGA10Q9Y5H3 936 aa14.21□□□□□ -0.13
SDC3-203ENST00000471567 ZNF462Q96JM2 2506 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 TMEM200CA6NKL6 621 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 OR6C76A6NM76 312 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 TTLL8A6PVC2 850 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 KLF11O14901 512 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 PRKNO60260 465 aaPredicted RBP14.2□□□□□ -0.14
SDC3-203ENST00000471567 PEX11AO75192 247 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 SASH3O75995 380 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 NT5EP21589 574 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 FEN1P39748 380 aaKnown RBP14.2□□□□□ -0.14
SDC3-203ENST00000471567 CD96P40200 585 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 ASMTP46597 345 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 FUT7Q11130 342 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 MAP4K2Q12851 820 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 CEBPEQ15744 281 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 SMU1Q2TAY7 513 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 ZNF750Q32MQ0 723 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 GALNTL6Q49A17 601 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 COLEC12Q5KU26 742 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 C6orf136Q5SQH8 315 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 RNF111Q6ZNA4 994 aa14.2□□□□□ -0.14
SDC3-203ENST00000471567 HORMAD2Q8N7B1 307 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms