RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MINDY4Q4G0A6 757 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 MFSD4BQ5TF39 518 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 CES4AQ5XG92 561 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 KANK2Q63ZY3 851 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 CLEC6AQ6EIG7 209 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 RNF165Q6ZSG1 346 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 BIVMQ86UB2 503 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 NUDT13Q86X67 352 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 METTL4Q8N3J2 472 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 GBP7Q8N8V2 638 aaPredicted RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 MGARPQ8TDB4 240 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 HAS2Q92819 552 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 NINJ1Q92982 152 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 MRPL1Q9BYD6 325 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 ACPTQ9BZG2 426 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 VN1R1Q9GZP7 353 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 DDX31Q9H8H2 851 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 LYRM4Q9HD34 91 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 LANCL2Q9NS86 450 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 CCM2LQ9NUG4 571 aaPredicted RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 NMRK1Q9NWW6 199 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 AHSPQ9NZD4 102 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 VPS29Q9UBQ0 182 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 C19orf25Q9UFG5 118 aaPredicted RBP11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 ZNF835Q9Y2P0 537 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 MEMO1Q9Y316 297 aa11.12□□□□□ -0.63
SQSTM1-206ENST00000466342 A0A0A6YYD5 115 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 ITM2AO43736 263 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 EEDO75530 441 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 CDC123O75794 336 aaPredicted RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SNUPNO95149 360 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 HSPA4LO95757 839 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 CHEK2O96017 543 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 CHN1P15882 459 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 BGNP21810 368 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SERPINB3P29508 390 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 ABCE1P61221 599 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 RHAGQ02094 409 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 TBL3Q12788 808 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SLAMF1Q13291 335 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SH2D4BQ5SQS7 431 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 MRM1Q6IN84 353 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SCIMPQ6UWF3 145 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 PAGE2Q7Z2X7 111 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 TRIM46Q7Z4K8 759 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 CPEB2Q7Z5Q1 589 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 PLPP5Q8NEB5 264 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 BRIX1Q8TDN6 353 aaKnown RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 NRGNQ92686 78 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 MAPKAP1Q9BPZ7 522 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 KCMF1Q9P0J7 381 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 PTGFRNQ9P2B2 879 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 PHF11Q9UIL8 331 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 ADAM29Q9UKF5 820 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 FIS1Q9Y3D6 152 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 TRAF6Q9Y4K3 522 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 SPACA6W5XKT8 324 aa11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 NSD1Q96L73 2696 aaPredicted RBP11.11□□□□□ -0.63
SQSTM1-206ENST00000466342 KIAA1324LA8MWY0 1029 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TMEM233B4DJY2 109 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 FAM227AF5H4B4 570 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CYR61O00622 381 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TMPRSS11DO60235 418 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 B4GALT2O60909 372 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 LYPLA1O75608 230 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TPP2P29144 1249 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 SLC1A6P48664 564 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 HNRNPH2P55795 449 aaKnown RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 HMGCS1Q01581 520 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 FOLH1Q04609 750 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 BST1Q10588 318 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 STX3Q13277 289 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 IMPG1Q17R60 797 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 UGT3A2Q3SY77 523 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 SPIN4Q56A73 249 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 ABHD17BQ5VST6 288 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 PLAG1Q6DJT9 500 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CYP20A1Q6UW02 462 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 Q6ZPB1 254 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 QSOX2Q6ZRP7 698 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 Q71RC1 249 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 COMMD6Q7Z4G1 85 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TMEM200AQ86VY9 491 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 PRIMA1Q86XR5 153 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TRIM42Q8IWZ5 723 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CLYBLQ8N0X4 340 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 C1orf52Q8N6N3 182 aaKnown RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 SIRT6Q8N6T7 355 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 FAM47BQ8NA70 645 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 RAB3IL1Q8TBN0 382 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 AGR3Q8TD06 166 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CA5BP1Q8WTZ4 195 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 CSF3RQ99062 836 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 C20orf27Q9GZN8 174 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 RNF32Q9H0A6 362 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 PRDM9Q9NQV7 894 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 LYARQ9NX58 379 aaKnown RBP11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 MS4A12Q9NXJ0 267 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 PLA2G3Q9NZ20 509 aa11.1□□□□□ -0.63
SQSTM1-206ENST00000466342 TEKT2Q9UIF3 430 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms