RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SSR2	P43308	183 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	TRPC1	P48995	793 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ATP6V0D1	P61421	351 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	HERVK_113	P63132	956 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ERVK-8	P63133	956 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	KCNJ2	P63252	427 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	DR1	Q01658	176 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	IRF8	Q02556	426 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	TBL3	Q12788	808 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	DUSP8	Q13202	625 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLAMF1	Q13291	335 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	NHSL2	Q5HYW2	709 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	PAGE2B	Q5JRK9	111 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	DCST1	Q5T197	706 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	NSUN5P2	Q63ZY6	315 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	BICRAL	Q6AI39	1079 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR4C11	Q6IEV9	310 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	SYT10	Q6XYQ8	523 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ISCA2	Q86U28	154 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	DND1	Q8IYX4	353 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ST13P4	Q8IZP2	240 aa	Predicted RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZCCHC7	Q8N3Z6	543 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	WFDC11	Q8NEX6	87 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	UCN3	Q969E3	161 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	C16orf45	Q96MC5	204 aa	Predicted RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	DGAT2	Q96PD7	388 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	RBBP8	Q99708	897 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ERVK-6	Q9BXR3	956 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	RPF2	Q9H7B2	306 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	RYDEN	Q9NUL5	291 aa	Known RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	NSMCE4A	Q9NXX6	385 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	CNIH4	Q9P003	139 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ERVK-19	Q9WJR5	959 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	TSC22D4	Q9Y3Q8	395 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	ASB4	Q9Y574	426 aa		10.23	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBN1	P35555	2871 aa	Known RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815		A0A0A6YYD5	115 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815		A0A1W2PR48	441 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MBD3L3	A6NE82	208 aa	Predicted RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	FAM159B	A6NKW6	160 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	AHRR	A9YTQ3	701 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CCNT2	O60583	730 aa	Known RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	EED	O75530	441 aa	Known RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC35E2B	P0CK96	405 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	COX7A2	P14406	83 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	DNASE1	P24855	282 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	SERPINB1	P30740	379 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	SSTR1	P30872	391 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	HOXC12	P31275	282 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	GALNS	P34059	522 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	RPL21	P46778	160 aa	Known RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CDK9	P50750	372 aa	Known RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	PLIN5	Q00G26	463 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	AP5B1	Q2VPB7	878 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	VASN	Q6EMK4	673 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	GRHL2	Q6ISB3	625 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MED27	Q6P2C8	311 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CYS1	Q717R9	158 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CAMKMT	Q7Z624	323 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	GPR180	Q86V85	440 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	LACC1	Q8IV20	430 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	KLHL7	Q8IXQ5	586 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZBED8	Q8IZ13	594 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	C7orf57	Q8NEG2	295 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	HUS1B	Q8NHY5	278 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	TANK	Q92844	425 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CMTM7	Q96FZ5	175 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	SMR3A	Q99954	134 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	DOHH	Q9BU89	302 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	PHACTR1	Q9C0D0	580 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	MS4A12	Q9NXJ0	267 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	ALKBH4	Q9NXW9	302 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815	CD274	Q9NZQ7	290 aa		10.22	□□□□□ -0.77
PTPN7-204	ENST00000462815		A0A1B0GTL3	188 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	TCRBV9S1A1T	A0A576	114 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR6C76	A6NM76	312 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815		K7EPI3	171 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	UBXN8	O00124	270 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	KIF2A	O00139	706 aa	Predicted RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	DVL2	O14641	736 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	GPR75	O95800	540 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	RAF1	P04049	648 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	CT62	P0C5K7	136 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	PCNA	P12004	261 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	DRD2	P14416	443 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	TCP1	P17987	556 aa	Known RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	SERPINB3	P29508	390 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	BSG	P35613	385 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	PIK3CB	P42338	1070 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ARFIP1	P53367	373 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBXW4	P57775	412 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	GPX6	P59796	221 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	RAB10	P61026	200 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ILF2	Q12905	390 aa	Known RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	BIK	Q13323	160 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	RPS6KA2	Q15349	733 aa		10.21	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms