RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IARS2Q9NSE4 1012 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 ABCF3Q9NUQ8 709 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 OLAHQ9NV23 265 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TAS2R13Q9NYV9 303 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 MOCS1Q9NZB8 636 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 C19orf25Q9UFG5 118 aaPredicted RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 SLC23A1Q9UHI7 598 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TEKT2Q9UIF3 430 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 TRMT6Q9UJA5 497 aaKnown RBP6.83□□□□□ -1.32
USP54-208ENST00000461520 ANKRD12Q6UB98 2062 aa6.83□□□□□ -1.32
USP54-208ENST00000461520 C2CD3Q4AC94 2353 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 A0A1B0GUH1 482 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 CES2O00748 559 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 LRRTM2O43300 516 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 JRKO75564 520 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 UQCRHP07919 91 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 STSP08842 583 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 HIST1H2AGP0C0S8 130 aaPredicted RBP6.82□□□□□ -1.32
USP54-208ENST00000461520 MYBL2P10244 700 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 CPEP16870 476 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 HIST1H2ADP20671 130 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 SLC6A9P48067 706 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 CSNK1G2P78368 415 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 MXRA7P84157 204 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 MAT1AQ00266 395 aaKnown RBP6.82□□□□□ -1.32
USP54-208ENST00000461520 CRYMQ14894 314 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 PPP1R7Q15435 360 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 SYT16Q17RD7 645 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 SPANXN3Q5MJ09 141 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 ZNF324BQ6AW86 544 aaPredicted RBP6.82□□□□□ -1.32
USP54-208ENST00000461520 HIBCHQ6NVY1 386 aaPredicted RBP6.82□□□□□ -1.32
USP54-208ENST00000461520 ZNF529Q6P280 563 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 AGTRAPQ6RW13 159 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 LCTLQ6UWM7 567 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 KIAA0408Q6ZU52 694 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 VN1R4Q7Z5H5 301 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 GALNT7Q86SF2 657 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 C17orf64Q86WR6 236 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 CNTN4Q8IWV2 1026 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 MYO1HQ8N1T3 1032 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 SIRT6Q8N6T7 355 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 OR9A4Q8NGU2 314 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 EEF1AKMT1Q8WVE0 214 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 NR4A3Q92570 626 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 TM4SF19Q96DZ7 209 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 OSBPL9Q96SU4 736 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 CYTH2Q99418 400 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 H2AFJQ9BTM1 129 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 SARGQ9BW04 601 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 ALOXE3Q9BYJ1 711 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 VN1R1Q9GZP7 353 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 PARVBQ9HBI1 364 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 FBXO34Q9NWN3 711 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 PDE10AQ9Y233 779 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 OSGIN2Q9Y236 505 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 DIDO1Q9BTC0 2240 aaKnown RBP6.82□□□□□ -1.32
USP54-208ENST00000461520 CROCCQ5TZA2 2017 aa6.82□□□□□ -1.32
USP54-208ENST00000461520 MDC1Q14676 2089 aaKnown RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 OR5H15A6NDH6 313 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 PABPN1LA6NDY0 278 aaKnown RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 DNALI1O14645 258 aaPredicted RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 RASAL1O95294 804 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 WDPCPO95876 746 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CRYABP02511 175 aaKnown RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 AHSGP02765 367 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CELA2AP08217 269 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLC35G6P0C7Q6 338 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 NPPBP16860 134 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 IL1RNP18510 177 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 IL10P22301 178 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 GABRB3P28472 473 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 XCR1P46094 333 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 MTNR1BP49286 362 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 AGTR2P50052 363 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 TDGF1P3P51864 188 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 EFNA3P52797 238 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 AP1S2P56377 157 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 TIAL1Q01085 375 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP54-208ENST00000461520 NAE1Q13564 534 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ZRSR2Q15696 482 aaKnown RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 MINDY4Q4G0A6 757 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 MFSD4BQ5TF39 518 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 PLAG1Q6DJT9 500 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CAPN13Q6MZZ7 669 aaPredicted RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 PRSS41Q7RTY9 318 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CPEB2Q7Z5Q1 589 aaKnown RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 ASPGQ86U10 573 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLC34A3Q8N130 599 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLC35F6Q8N357 371 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ABHD11Q8NFV4 315 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 OR51Q1Q8NH59 317 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SUN3Q8TAQ9 357 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLC13A3Q8WWT9 602 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLCO2A1Q92959 643 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 LINGO1Q96FE5 620 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CERS2Q96G23 380 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ZNF354BQ96LW1 612 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 OR1F2PQ96R84 312 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 TAAR6Q96RI8 345 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 NDNQ99608 321 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms