RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 THAP7Q9BT49 309 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 A0A1W2PQH9 124 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 CILPO75339 1184 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 H1F0P07305 194 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 CPN1P15169 458 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 CALCRP30988 508 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 GDF10P55107 478 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 DNAJB13P59910 316 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ACTA2P62736 377 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ACTG2P63267 376 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ACTC1P68032 377 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ACTA1P68133 377 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 GK3PQ14409 553 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 CAPN13Q6MZZ7 669 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 HIST2H3AQ71DI3 136 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ANKRD46Q86W74 232 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 KIAA1143Q96AT1 154 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 KREMEN1Q96MU8 473 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 TRMT61BQ9BVS5 477 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 OR51V1Q9H2C8 321 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 IL23AQ9NPF7 189 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 OR6C2Q9NZP2 312 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 CNTN3Q9P232 1028 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 MAP4K5Q9Y4K4 846 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 LOC102723532A0A0G2JNH3 316 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 A8MVJ9 347 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CAPN5O15484 640 aaPredicted RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 DLX3O60479 287 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 RAF1P04049 648 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 DRD5P21918 477 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 EEF1A1P68104 462 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 EEF1A2Q05639 463 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 SELENBP1Q13228 472 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 SCARB2Q14108 478 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 PTCHD3Q3KNS1 767 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 EEF1A1P5Q5VTE0 462 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 SAP130Q9H0E3 1048 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 FZD8Q9H461 694 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 DPEP3Q9H4B8 488 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 TFB2MQ9H5Q4 396 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 LRFN1Q9P244 771 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 EPHX1P07099 455 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 RGS8P57771 180 aaPredicted RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 CERS6Q6ZMG9 384 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 SHKBP1Q8TBC3 707 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 IRF7Q92985 503 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 MED18Q9BUE0 208 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 AGPAT4Q9NRZ5 378 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 IMP3Q9NV31 184 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 FNIP2Q9P278 1114 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 MYEF2Q9P2K5 600 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 CLIC1O00299 241 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CLDN5O00501 218 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 LRCH4O75427 683 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CKMT1AP12532 417 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CELP19835 753 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 IGFALSP35858 605 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 ADH7P40394 386 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 WNT3AP56704 352 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 MAXP61244 160 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 PRR5P85299 388 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 TEKQ02763 1124 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 GANABQ14697 944 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 UBXN2BQ14CS0 331 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 FAM151BQ6UXP7 276 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 OR2L8Q8NGY9 312 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 FBXO27Q8NI29 283 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 GMLQ99445 158 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CDC6Q99741 560 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 OLAHQ9NV23 265 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 DTLQ9NZJ0 730 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 AP1M2Q9Y6Q5 423 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 A0A0U1RQF3 1178 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 A8MT66 165 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 TCAPO15273 167 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 GABARAPO95166 117 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CYB5AP00167 134 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 GSRP00390 522 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 SMIM6P0DI80 62 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CCND3P30281 292 aaPredicted RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 MS4A2Q01362 244 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 TEX44Q53QW1 395 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.74□□□□□ -0.37
USP40-208ENST00000450966 RHBDF2Q6PJF5 856 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 CLEC9AQ6UXN8 241 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 GAREM2Q75VX8 874 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 OR5B17Q8NGF7 314 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 LHFPL5Q8TAF8 219 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 HHIPL1Q96JK4 782 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 ZNF354BQ96LW1 612 aa12.74□□□□□ -0.37
USP40-208ENST00000450966 C2orf92A0A1B0GVN3 265 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 D6RAR5 112 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PAGE1O75459 146 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 RBMXL2O75526 392 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 NRIP1P48552 1158 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 HCCSP53701 268 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 CHIT1Q13231 466 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 LARS2Q15031 903 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 LRRC26Q2I0M4 334 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TMEM27Q9HBJ8 222 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms