RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CHTF18Q8WVB6 975 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 TM4SF18Q96CE8 201 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 RASL10BQ96S79 203 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SMC6Q96SB8 1091 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ACPTQ9BZG2 426 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 TIMMDC1Q9NPL8 285 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SEC14L3Q9UDX4 400 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 MCM8Q9UJA3 840 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 PSME2Q9UL46 239 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ERVK-19Q9WJR5 959 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 OSGIN2Q9Y236 505 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SLC5A6Q9Y289 635 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 DIDO1Q9BTC0 2240 aaKnown RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 CROCCQ5TZA2 2017 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 SERTM1A2A2V5 107 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 ASPDHA6ND91 283 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 GOLGA6L10A6NI86 522 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 KLRC4-KLRK1H3BQV0 150 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 FOXA1P55317 472 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 HMGCS1Q01581 520 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 SRSF11Q05519 484 aaKnown RBP14.09□□□□□ -0.15
LIMS3-201ENST00000437679 IMPG1Q17R60 797 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 SCIMPQ6UWF3 145 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 IL20RBQ6UXL0 311 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 RNF111Q6ZNA4 994 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 SLC29A4Q7RTT9 530 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 C10orf107Q8IVU9 208 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 DOK4Q8TEW6 326 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 FRMD6Q96NE9 622 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 TMEM109Q9BVC6 243 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 RAB21Q9UL25 225 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 USP9YO00507 2555 aaPredicted RBP14.09□□□□□ -0.15
LIMS3-201ENST00000437679 COL12A1Q99715 3063 aa14.09□□□□□ -0.15
LIMS3-201ENST00000437679 SETXQ7Z333 2677 aaKnown RBP14.08□□□□□ -0.15
LIMS3-201ENST00000437679 GNG14A0A1W2PPG7 69 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 OR6C76A6NM76 312 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 HRKO00198 91 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 PCDH7O60245 1069 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 TRIM13O60858 407 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 SPAG7O75391 227 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 OR6B1O95007 311 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 UNC5CO95185 931 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 CPMP14384 443 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 PORP16435 677 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-201ENST00000437679 NT5EP21589 574 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 SOX3P41225 446 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 ALDH9A1P49189 494 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 MEOX1P50221 254 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 KCNK10P57789 538 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 BTKQ06187 659 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 RBPJQ06330 500 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 PCLAFQ15004 111 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 MPEG1Q2M385 716 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 KRTCAP3Q53RY4 240 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 SPDYAQ5MJ70 313 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 SLC48A1Q6P1K1 146 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 OPN5Q6U736 354 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 GALNT12Q8IXK2 581 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 C9orf40Q8IXQ3 194 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 POGLUT1Q8NBL1 392 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 SLC22A8Q8TCC7 542 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 KLHL29Q96CT2 875 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 APIPQ96GX9 242 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 FAM111AQ96PZ2 611 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 TRMOQ9BU70 441 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 CXorf21Q9HAI6 301 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 ERRFI1Q9UJM3 462 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-201ENST00000437679 CES1P1Q9UKY3 287 aa14.08□□□□□ -0.16
LIMS3-201ENST00000437679 ICE1Q9Y2F5 2266 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 A0A1W2PS29 197 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 NPIPA5E9PKD4 350 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 PEX1O43933 1283 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 ERAL1O75616 437 aaKnown RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 UROSP10746 265 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 DRD2P14416 443 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF24P17028 368 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 CSNK2A2P19784 350 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 SERPINB3P29508 390 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 TIA1P31483 386 aaKnown RBP eCLIP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 KRT71Q3SY84 523 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 C4orf17Q53FE4 359 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 PIGGQ5H8A4 983 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 RTL4Q6ZR62 310 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 MDGA2Q7Z553 956 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 SULF2Q8IWU5 870 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 MMP21Q8N119 569 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 CPSF7Q8N684 471 aaKnown RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 PSD4Q8NDX1 1056 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 TCP10LQ8TDR4 215 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 SGCZQ96LD1 299 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 GPR137Q96N19 417 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 GAL3ST4Q96RP7 486 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 GATA5Q9BWX5 397 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 SHCBP1LQ9BZQ2 653 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 TSPAN10Q9H1Z9 355 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 RRAGDQ9NQL2 400 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 RYDENQ9NUL5 291 aaKnown RBP14.07□□□□□ -0.16
LIMS3-201ENST00000437679 SENP1Q9P0U3 644 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 NPIPA1Q9UND3 350 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 DLGAP4Q9Y2H0 992 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 215.9 ms