RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PTPN6P29350 595 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 GSK3BP49841 420 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 CDK9P50750 372 aaKnown RBP16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 MAPK10P53779 464 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 HSD17B7P56937 341 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 DCDP81605 110 aaKnown RBP16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 PRR5P85299 388 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 OCA2Q04671 838 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 TP53BP2Q13625 1128 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 SELPLGQ14242 412 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 FLOT2Q14254 428 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 ZNF750Q32MQ0 723 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 MINDY4Q4G0A6 757 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 CDCP2Q5VXM1 449 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 RAB11FIP2Q7L804 512 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 TMEM52Q8NDY8 209 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 C7orf57Q8NEG2 295 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 OR2T12Q8NG77 320 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 OR56A1Q8NGH5 318 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 OR9A2Q8NGT5 310 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 OR10A6Q8NH74 314 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 SFXN5Q8TD22 340 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 NETO1Q8TDF5 533 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 ZFP90Q8TF47 636 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 LIN37Q96GY3 246 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 LRGUKQ96M69 825 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 DPH2Q9BQC3 489 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 MUC13Q9H3R2 512 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 PIF1Q9H611 641 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 CXorf36Q9H7Y0 433 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 ACSL6Q9UKU0 697 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 MMACHCQ9Y4U1 282 aa16.1■□□□□ 0.17
CCDC28B-202ENST00000421922 CCDC187A0A096LP49 1063 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 SLITRK5O94991 958 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CCL4P13236 92 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 HOXB9P17482 250 aaPredicted RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CRATP43155 626 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CCT3P49368 545 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 ANXA11P50995 505 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 BIKQ13323 160 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 EIF3IQ13347 325 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CEBPEQ15744 281 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 DCAF12Q5T6F0 453 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 TMEM107Q6UX40 140 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 TMEM64Q6YI46 380 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CLEC4FQ8N1N0 589 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 BMPERQ8N8U9 685 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 FAM156AQ8NDB6 213 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 STMN2Q93045 179 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 ASB9Q96DX5 294 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 RNF31Q96EP0 1072 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 MAGED4Q96JG8 741 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 SLC35G5Q96KT7 338 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 ZNF681Q96N22 645 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 DGAT2Q96PD7 388 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 PELOQ9BRX2 385 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 SPATA9Q9BWV2 254 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 ZCCHC3Q9NUD5 404 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 PISDQ9UG56 409 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 CD300AQ9UGN4 299 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 GPN3Q9UHW5 284 aaPredicted RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 POMPQ9Y244 141 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 NEUROG3Q9Y4Z2 214 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 TMEM184BQ9Y519 407 aaPredicted RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 TPRP12270 2363 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 EPG5Q9HCE0 2579 aa16.09■□□□□ 0.17
CCDC28B-202ENST00000421922 PCNX2A6NKB5 2137 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 FAM220BPB1ANY3 271 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 EMC8O43402 210 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 TIAF1O95411 115 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 KLK3P07288 261 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 FTH1P19P0C7X4 201 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 CSRP1P21291 193 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 ELF3P78545 371 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 VAC14Q08AM6 782 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 FADDQ13158 208 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 SERTAD2Q14140 314 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 TRIM25Q14258 630 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 ERV3-1Q14264 604 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 KIF26BQ2KJY2 2108 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 NKAIN1Q4KMZ8 207 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 C10orf67Q8IYJ2 551 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 OR52N2Q8NGI0 321 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 PSMA8Q8TAA3 256 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 SUN3Q8TAQ9 357 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 ZPBPQ9BS86 351 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 ULBP3Q9BZM4 244 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 KAT8Q9H7Z6 458 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 C14orf105Q9NVL8 296 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 DDX18Q9NVP1 670 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 TOR4AQ9NXH8 423 aa16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 IFT80Q9P2H3 777 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-202ENST00000421922 SPAARA0A1B0GVQ0 90 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SYNDIG1LA6NDD5 238 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 DYRK3O43781 588 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SORBS2O94875 1100 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 IFNA16P05015 189 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SLC35E2P0CK97 266 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 MSX2P35548 267 aaPredicted RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms