RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CCDC151A5D8V7 595 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 A8MVJ9 347 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 ZNF354AO60765 605 aaPredicted RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 GUCY1B2O75343 617 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 XKP51811 444 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 NAA20P61599 178 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 RAE1P78406 368 aaKnown RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 ALDH6A1Q02252 535 aaKnown RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 BTKQ06187 659 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 ASPHQ12797 758 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 PCLAFQ15004 111 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 SPRED3Q2MJR0 410 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 LIPMQ5VYY2 423 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 C10orf107Q8IVU9 208 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 SULF2Q8IWU5 870 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 GBP7Q8N8V2 638 aaPredicted RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 BANPQ8N9N5 519 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 PSMG3-AS1Q96PY0 264 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 IQCGQ9H095 443 aaKnown RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 TNFRSF12AQ9NP84 129 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 HPF1Q9NWY4 346 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 CES1P1Q9UKY3 287 aa13.73□□□□□ -0.21
LIMS4-201ENST00000413601 KLF13Q9Y2Y9 288 aaPredicted RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 ASH1LQ9NR48 2969 aaKnown RBP13.73□□□□□ -0.21
LIMS4-201ENST00000413601 COL12A1Q99715 3063 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 KLRC4-KLRK1H3BQV0 150 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 LRRTM2O43300 516 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 PEX1O43933 1283 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 SPAG7O75391 227 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 CRCPO75575 148 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 ERAL1O75616 437 aaKnown RBP13.72□□□□□ -0.21
LIMS4-201ENST00000413601 CPMP14384 443 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 PORP16435 677 aaPredicted RBP13.72□□□□□ -0.21
LIMS4-201ENST00000413601 SERPINB3P29508 390 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 GALNSP34059 522 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 ALDH9A1P49189 494 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MEOX1P50221 254 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 GPR85P60893 370 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 TRA2BP62995 288 aaKnown RBP13.72□□□□□ -0.21
LIMS4-201ENST00000413601 RNFT1Q5M7Z0 435 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 SLC48A1Q6P1K1 146 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 RNF111Q6ZNA4 994 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MREGQ8N565 214 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 NUBPLQ8TB37 319 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 APIPQ96GX9 242 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 FAM111AQ96PZ2 611 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 CXorf21Q9HAI6 301 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 TIMMDC1Q9NPL8 285 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MKS1Q9NXB0 559 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 SLC17A7Q9P2U7 560 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MCM8Q9UJA3 840 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MID2Q9UJV3 735 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 POLEQ07864 2286 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 NCKAP5O14513 1909 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 MYO7BQ6PIF6 2116 aa13.72□□□□□ -0.21
LIMS4-201ENST00000413601 USP9XQ93008 2570 aaPredicted RBP13.72□□□□□ -0.21
LIMS4-201ENST00000413601 NINQ8N4C6 2090 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 DIDO1Q9BTC0 2240 aaKnown RBP13.71□□□□□ -0.21
LIMS4-201ENST00000413601 GNG14A0A1W2PPG7 69 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SERTM1A2A2V5 107 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 NPIPA5E9PKD4 350 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 PCDH7O60245 1069 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 LDLRP01130 860 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 CLPSP04118 112 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 STSP08842 583 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 CT62P0C5K7 136 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 CREB1P16220 341 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 ALDH3A1P30838 453 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SSTR4P31391 388 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 DEKP35659 375 aaKnown RBP13.71□□□□□ -0.21
LIMS4-201ENST00000413601 FEN1P39748 380 aaKnown RBP13.71□□□□□ -0.21
LIMS4-201ENST00000413601 RFC3P40938 356 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SLC37A1P57057 533 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 ACSM2AQ08AH3 577 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 MPEG1Q2M385 716 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 C4orf17Q53FE4 359 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SPIN4Q56A73 249 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 PIGGQ5H8A4 983 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SPDYAQ5MJ70 313 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 ACSM2BQ68CK6 577 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 FAM180BQ6P0A1 224 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 OPN5Q6U736 354 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 SLC29A4Q7RTT9 530 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 GPALPP1Q8IXQ4 340 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 PSD4Q8NDX1 1056 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 KLHL29Q96CT2 875 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 GPR137Q96N19 417 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 GAL3ST4Q96RP7 486 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 TMEM109Q9BVC6 243 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 FAIM2Q9BWQ8 316 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 GATA5Q9BWX5 397 aaPredicted RBP13.71□□□□□ -0.21
LIMS4-201ENST00000413601 DEPPQ9NTK1 212 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 HEY2Q9UBP5 337 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 RAB21Q9UL25 225 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 NPIPA1Q9UND3 350 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 DLGAP4Q9Y2H0 992 aa13.71□□□□□ -0.21
LIMS4-201ENST00000413601 ICE1Q9Y2F5 2266 aa13.7□□□□□ -0.22
LIMS4-201ENST00000413601 WIPF3A6NGB9 483 aa13.7□□□□□ -0.22
LIMS4-201ENST00000413601 GOLGA6L10A6NI86 522 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms