RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 C7orf50Q9BRJ6 194 aaKnown RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 CCDC106Q9BWC9 280 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 ASPNQ9BXN1 380 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 PLA2G2FQ9BZM2 168 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 DPAGT1Q9H3H5 408 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 ANKZF1Q9H8Y5 726 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 TRPV4Q9HBA0 871 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 MALT1Q9UDY8 824 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 CEACAM1P13688 526 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 GABRG2P18507 467 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 HK1P19367 917 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 CCL7P80098 99 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 SLC25A3Q00325 362 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 NIPAL4Q0D2K0 466 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 TARDBPQ13148 414 aaKnown RBP eCLIP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 SERTAD2Q14140 314 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 N4BP2L1Q5TBK1 243 aaPredicted RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM225Q6GV28 225 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 SLC39A4Q6P5W5 647 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 PAPD4Q6PIY7 484 aaKnown RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 PRELID2Q8N945 189 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM203Q969S6 136 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 C16orf58Q96GQ5 468 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 UNKLQ9H9P5 680 aaKnown RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 S100A14Q9HCY8 104 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 C14orf105Q9NVL8 296 aa6.98□□□□□ -1.29
SCN9A-202ENST00000409435 ZMAT5Q9UDW3 170 aaKnown RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.98□□□□□ -1.29
SCN9A-202ENST00000409435 TRABD2BA6NFA1 517 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GABRDO14764 452 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 OR1I1O60431 355 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RASAL1O95294 804 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NUDT17P0C025 328 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TIMP2P16035 220 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 HOXD9P28356 352 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 FOXN2P32314 431 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 KHKP50053 298 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF844Q08AG5 666 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RNASEH2BQ5TBB1 312 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZCCHC12Q6PEW1 402 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 MON1BQ7L1V2 547 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 C6orf120Q7Z4R8 191 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GPR180Q86V85 440 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NXPE1Q8N323 547 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 MRPL57Q9BQC6 102 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SDCBP2Q9H190 292 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RANBP3Q9H6Z4 567 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZBTB20Q9HC78 741 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 IFT46Q9NQC8 304 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SPHK1Q9NYA1 384 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM8BA6NDV4 472 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NPIPA5E9PKD4 350 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 H7BY64 318 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PRICKLE3O43900 615 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PDGFBP01127 241 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CDH1P12830 882 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 MYF5P13349 255 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RORCP51449 518 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CDH13P55290 713 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 EXT1Q16394 746 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 DPYSL2Q16555 572 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 QPCTQ16769 361 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CYP27C1Q4G0S4 372 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF311Q5JNZ3 666 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 FOXR2Q6PJQ5 311 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 VASH2Q86V25 355 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SP7Q8TDD2 431 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PRAP1Q96NZ9 151 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PSKH2Q96QS6 385 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NPY6RQ99463 290 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 FNDC11Q9BVV2 318 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CDH20Q9HBT6 801 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SACM1LQ9NTJ5 587 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 COPZ2Q9P299 210 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF69Q9UC07 566 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NPIPA1Q9UND3 350 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TIMM8BQ9Y5J9 83 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 LOC100509620A0A075B734 347 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TLCD2A6NGC4 264 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 OR6C65A6NJZ3 312 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 BCAS2O75934 225 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SLC2A2P11168 524 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PPIBP23284 216 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SPINT3P49223 89 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF81P51508 661 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ILKQ13418 452 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 DNASE1L3Q13609 305 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NOMO1Q15155 1222 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TAZQ16635 292 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 COL28A1Q2UY09 1125 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM35AQ53FP2 167 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SUSD1Q6UWL2 747 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF687Q8N1G0 1237 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PLD5Q8N7P1 536 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GSTCDQ8NEC7 633 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PHF10Q8WUB8 498 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TMED9Q9BVK6 235 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 DMGDHQ9UI17 866 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TUBAL3A6NHL2 446 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SAP18O00422 153 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms