RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MPP7Q5T2T1 576 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SLC16A12Q6ZSM3 486 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ANKRD53Q8N9V6 530 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GAL3ST3Q96A11 431 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 REPS1Q96D71 796 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FCRL4Q96PJ5 515 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ZCCHC3Q9NUD5 404 aaKnown RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SIRT5Q9NXA8 310 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ACTR10Q9NZ32 417 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GULP1Q9UBP9 304 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FBXW2Q9UKT8 454 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 NCKAP1Q9Y2A7 1128 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FXYD6-FXYD2A0A087WZ82 144 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SULT1B1O43704 296 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GLAP06280 429 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SPNP16150 400 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 PDHA2P29803 388 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 AVPR1BP47901 424 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 CRISP3P54108 245 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ERVK-21P61565 698 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GPLD1P80108 840 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 PIN1Q13526 163 aaPredicted RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 PTGES3Q15185 160 aaKnown RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 MPPE1Q53F39 396 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 AFMIDQ63HM1 303 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GTF2IRD2BQ6EKJ0 949 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF425Q6IV72 752 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 DHRS4L2Q6PKH6 230 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 CHST9Q7L1S5 443 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 LIMS2Q7Z4I7 341 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 GTF2IRD2Q86UP8 949 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 DCAF4L2Q8NA75 395 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF740Q8NDX6 193 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SIMC1Q8NDZ2 872 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF671Q8TAW3 534 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FANK1Q8TC84 345 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 KLHL6Q8WZ60 621 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TRIB3Q96RU7 358 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 HDHD5Q9BXW7 423 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FXYD6Q9H0Q3 95 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TAS2R3Q9NYW6 316 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TMEFF2Q9UIK5 374 aaPredicted RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 FRS3O43559 492 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 OR1F1O43749 312 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 IL3P08700 152 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 JUNBP17275 347 aaPredicted RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 DNASE1P24855 282 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TGFBR2P37173 567 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 RGS6P49758 472 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 HBA1P69905 142 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SPHARQ15513 63 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 LYSMD2Q8IV50 215 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 OR7G3Q8NG95 312 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF461Q8TAF7 563 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 RBCK1Q9BYM8 510 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TREM1Q9NP99 234 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ATP13A2Q9NQ11 1180 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 EVA1BQ9NVM1 165 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 H3BSH0 61 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 SSX4O60224 188 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 HLA-EP13747 358 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 FNDC3BQ53EP0 1204 aaKnown RBP11.38□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF730Q6ZMV8 503 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 C17orf107Q6ZR85 190 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 TADA1Q96BN2 335 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 EID2BQ96D98 161 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 MACROD1Q9BQ69 325 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 IER2Q9BTL4 223 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 GON7Q9BXV9 100 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 ENOPH1Q9UHY7 261 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 IGLV3-10A0A075B6K4 115 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 A0A1W2PPK0 400 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 ENTPD6O75354 484 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 CELP19835 753 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 TNFSF8P32971 234 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 CSNK1DP48730 415 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 ACVR1Q04771 509 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 C8orf82Q6P1X6 216 aaPredicted RBP11.38□□□□□ -0.59
HMGB1-206ENST00000405805 LYPD8Q6UX82 237 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 B3GLCTQ6Y288 498 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 PM20D2Q8IYS1 436 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 LILRB1Q8NHL6 650 aaPredicted RBP11.38□□□□□ -0.59
HMGB1-206ENST00000405805 CEP76Q8TAP6 659 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 NEDD4LQ96PU5 975 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 TGIF2Q9GZN2 237 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 OR51V1Q9H2C8 321 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 MAGIXQ9H6Y5 334 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 SMAD9O15198 467 aaKnown RBP11.38□□□□□ -0.59
HMGB1-206ENST00000405805 CTSCP53634 463 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 DEFA6Q01524 100 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 DSC1Q08554 894 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 HEPACAMQ14CZ8 416 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 PAN3Q58A45 887 aaKnown RBP11.38□□□□□ -0.59
HMGB1-206ENST00000405805 SLC35F1Q5T1Q4 408 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 IDNKQ5T6J7 187 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 ELP2Q6IA86 826 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 SSX9Q7RTT3 188 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 C17orf64Q86WR6 236 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 CCDC36Q8IYA8 594 aa11.38□□□□□ -0.59
HMGB1-206ENST00000405805 GEMIN6Q8WXD5 167 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms