RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 TTC26A0AVF1 554 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 GOLGA8IPA6NC78 632 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 C5orf52A6NGY3 159 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 MSGN1A6NI15 193 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 GOLGA8JA6NMD2 632 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 SNURFLB1AK76 121 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 SELENOFO60613 162 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 FCGR3BO75015 233 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 GLRA3O75311 464 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 CSDE1O75534 798 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 AP2A2O94973 939 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LUC7L3O95232 432 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 PGLSO95336 258 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 SIX3O95343 332 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 CXCL10P02778 98 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 RAF1P04049 648 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 VIMP08670 466 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 ALDH4A1P30038 563 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 KCNJ1P48048 391 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 HERV-K104P61576 105 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 UBXN1Q04323 297 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 SCN1BQ07699 218 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 HSP90AA4PQ58FG1 418 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 XKR4Q5GH76 650 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 C1orf220Q5T0J3 134 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LCN1P1Q5VSP4 162 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LYSMD4Q5XG99 296 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 SPECC1LQ69YQ0 1117 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 TXNRD3NBQ6F5E7 133 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 TWF2Q6IBS0 349 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 FAM166AQ6J272 317 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 BTNL8Q6UX41 500 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 BTN2A1Q7KYR7 527 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 PIGWQ7Z7B1 504 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 WDR49Q8IV35 697 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 TIGD4Q8IY51 512 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LRTM2Q8N967 370 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 DYRK2Q92630 601 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LGALS12Q96DT0 336 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 EEF2KMTQ96G04 330 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 CPB2Q96IY4 423 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 LRR1Q96L50 414 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 CCDC114Q96M63 670 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 FAM213AQ9BRX8 229 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 KRTAP17-1Q9BYP8 105 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 ACTL8Q9H568 366 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 RPF1Q9H9Y2 349 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 RBAKQ9NYW8 714 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 EPHA6Q9UF33 1036 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 FBXL5Q9UKA1 691 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 GRID1Q9ULK0 1009 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 PIN4Q9Y237 131 aaKnown RBP4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 PDE4DIPQ5VU43 2346 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 KIAA1671Q9BY89 1806 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 GBF1Q92538 1859 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 PTPRDP23468 1912 aa4.36□□□□□ -1.71
HMGB3P19-201ENST00000403971 VWA8A3KMH1 1905 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 MTCL1Q9Y4B5 1905 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 LRRIQ3A6PVS8 624 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 C17orf105B2RV13 164 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 PES1O00541 588 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ZNF195O14628 629 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 KLF11O14901 512 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 EPHB6O15197 1021 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ST8SIA3O43173 380 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CDK2AP2O75956 126 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 PAK4O96013 591 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 TIMP1P01033 207 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ATP1B1P05026 303 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 GHRP10912 638 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 GP1BBP13224 206 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 KCNE1P15382 129 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 EPORP19235 508 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 TNNI1P19237 187 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CYP3A5P20815 502 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CD52P31358 61 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 TIA1P31483 386 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 DUTP33316 252 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 TNFSF9P41273 254 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ACOT2P49753 483 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 NR0B1P51843 470 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CRIP2P52943 208 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 HNRNPDQ14103 355 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 RBM39Q14498 530 aaKnown RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 GPNMBQ14956 572 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 SYCP1Q15431 976 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ZBTB6Q15916 424 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 EXOC3L4Q17RC7 722 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 LRRC26Q2I0M4 334 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 EPC2Q52LR7 807 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 NHSL2Q5HYW2 709 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 BHLHB9Q6PI77 547 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 ALKAL1Q6UXT8 129 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 GBP6Q6ZN66 633 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 SLC24A5Q71RS6 500 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CDR2LQ86X02 465 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 CREBRFQ8IUR6 639 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 LACC1Q8IV20 430 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 DCLK2Q8N568 766 aa4.35□□□□□ -1.71
HMGB3P19-201ENST00000403971 FBXL13Q8NEE6 735 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms