RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NPIPA3F8WFD2 350 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ZSCAN12O43309 604 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 TLX3O43711 291 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 CBR3O75828 277 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 CLPXO76031 633 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DFFBO76075 338 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ADGRL1O94910 1474 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 NDUFA7O95182 113 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 KLHL2O95198 593 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SNAI1O95863 264 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 WNT1P04628 370 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 MMP3P08254 477 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 STAG3L2P0CL84 134 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PTNP21246 168 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DGKAP23743 735 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SRD5A2P31213 254 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 GPR4P46093 362 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 RAB9AP51151 201 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ARHGDIBP52566 201 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PGGT1BP53609 377 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 FOXG1P55316 489 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 MYL6P60660 151 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 GSTO1P78417 241 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 OTUD4Q01804 1114 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 BDH1Q02338 343 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PPIDQ08752 370 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ASPHQ12797 758 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 NME3Q13232 169 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DAZAP2Q15038 168 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 CA9Q16790 459 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ZSWIM7Q19AV6 140 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF829Q3KNS6 432 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DCAF4L1Q3SXM0 396 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ALG10Q5BKT4 473 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 XKR7Q5GH72 579 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ALG10BQ5I7T1 473 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PLCXD3Q63HM9 321 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 AWAT2Q6E213 333 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DUS1LQ6P1R4 473 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DLK2Q6UY11 383 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 KCTD8Q6ZWB6 473 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 LUZP2Q86TE4 346 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 LINC00523Q86TU6 105 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 C12orf56Q8IXR9 622 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 MB21D2Q8IYB1 491 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ADGRF4Q8IZF3 695 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 RBFAQ8N0V3 343 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PCDH20Q8N6Y1 951 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ASCC1Q8N9N2 400 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 TERB1Q8NA31 727 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ARRDC2Q8TBH0 407 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 GRHL3Q8TE85 626 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 GPX8Q8TED1 209 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PDCD6IPQ8WUM4 868 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SPRYD4Q8WW59 207 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 IGSF21Q96ID5 467 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF479Q96JC4 524 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 FAM20AQ96MK3 541 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 MACROD1Q9BQ69 325 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 TM2D2Q9BX73 214 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PCDH11YQ9BZA8 1340 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SPRY4Q9C004 299 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 STRADBQ9C0K7 418 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 IL26Q9NPH9 171 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DDX28Q9NUL7 540 aaKnown RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SMOXQ9NWM0 555 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 PIPOXQ9P0Z9 390 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 MBD2Q9UBB5 411 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 CD300AQ9UGN4 299 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 ERRFI1Q9UJM3 462 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-204ENST00000399489 TBC1D24Q9ULP9 559 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 GAB2Q9UQC2 676 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 DIP2BQ9P265 1576 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GRIN2AQ12879 1464 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 FANCIQ9NVI1 1328 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TRAV18A0A075B6X5 111 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 LOC105371242A0A075B767 164 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 OR2M5A3KFT3 312 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 A6NNC1 897 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 C17orf105B2RV13 164 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SPINT2O43291 252 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 OR1F1O43749 312 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TIMM8AO60220 97 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 RNF8O76064 485 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ECDO95905 644 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 APOA1P02647 267 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 KRT19P08727 400 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 IGFBP1P08833 259 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 PRPS2P11908 318 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 IRF2P14316 349 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 CYP11B1P15538 503 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 PIGAP37287 484 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ALDH3B1P43353 468 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 NKX2-1P43699 371 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 BCAP31P51572 246 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 CCR4P51679 360 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GEMP55040 296 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TMPRSS3P57727 454 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 DSTNP60981 165 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms