RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SLBPQ14493 270 aaKnown RBP eCLIP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 FRG2Q64ET8 278 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 C3P1Q6ZMU1 363 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 RNF165Q6ZSG1 346 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 SPPL2CQ8IUH8 684 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 CPSF7Q8N684 471 aaKnown RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ABHD11Q8NFV4 315 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ELP5Q8TE02 316 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 SELENOMQ8WWX9 145 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 THAP11Q96EK4 314 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 PPP1R36Q96LQ0 422 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 LURAP1Q96LR2 239 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 FRG2BQ96QU4 278 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 UTP23Q9BRU9 249 aaKnown RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 PITHD1Q9GZP4 211 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 KLHL31Q9H511 634 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 MEAF6Q9HAF1 191 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 TCF7L2Q9NQB0 619 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF490Q9ULM2 529 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 TRIM33Q9UPN9 1127 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 PCDHGB6Q9Y5F9 930 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 VPS13CQ709C8 3753 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF469Q96JG9 3925 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 A8MUA0 341 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 MAGEB17A8MXT2 336 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 ADAM10O14672 748 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 RGS14O43566 566 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 ASNA1O43681 348 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 PRAMEF4O60810 478 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SERPIND1P05546 499 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SP1P08047 785 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 CYC1P08574 325 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 LINC00032P0C843 101 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 PCNAP12004 261 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 MAOAP21397 527 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 TPP2P29144 1249 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SERPINB1P30740 379 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 OR4D2P58180 307 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 AP2B1P63010 937 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 OC90Q02509 493 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 RBPJQ06330 500 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 EXT1Q16394 746 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 MAPKAPK3Q16644 382 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 IMPG1Q17R60 797 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SLC9B1Q4ZJI4 515 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SGO1Q5FBB7 561 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 PRAMEF9Q5VWM5 478 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 METTL21CQ5VZV1 264 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 NXNQ6DKJ4 435 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SLC25A25Q6KCM7 469 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 TMIGD1Q6UXZ0 262 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 Q6ZPB1 254 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 MAVSQ7Z434 540 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 RPS19BP1Q86WX3 136 aaKnown RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 GBP7Q8N8V2 638 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 ANKRD53Q8N9V6 530 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 NFAM1Q8NET5 270 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 CEP70Q8NHQ1 597 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 ACTRT2Q8TDY3 377 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 UTP15Q8TED0 518 aaKnown RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 THAP3Q8WTV1 239 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-202ENST00000396828 TBC1D20Q96BZ9 403 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 LPAR4Q99677 370 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 EBF4Q9BQW3 602 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 CCDC28BQ9BUN5 200 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 SARGQ9BW04 601 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 NT5DC2Q9H857 520 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 NECTIN3Q9NQS3 549 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 NMRK1Q9NWW6 199 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 LRFN1Q9P244 771 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 ADGRE2Q9UHX3 823 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 MEMO1Q9Y316 297 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 HRH3Q9Y5N1 445 aa9.64□□□□□ -0.87
NEDD8-202ENST00000396828 GOLGA8QA0A0J9YX86 632 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TRBC2A0A5B9 178 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 GOLGA8OA6NCC3 632 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 ANKDD1BA6NHY2 528 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 GOLGA8NF8WBI6 632 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 SDHDO14521 159 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CCDC22O60826 627 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 PDYNP01213 254 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 JUNP05412 331 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 SLC35G6P0C7Q6 338 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 SMIM10L1P0DMW3 83 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 ESRRAP11474 423 aaPredicted RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 HSD3B1P14060 373 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 COX6B1P14854 86 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CD46P15529 392 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 ALOX12P18054 663 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CD22P20273 847 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 HSD3B2P26439 372 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 GSTM2P28161 218 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 EPHA3P29320 983 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 PTGER1P34995 402 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 RFC3P40938 356 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 PIK3CBP42338 1070 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 SCTRP47872 440 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 RAB8AP61006 207 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CSTF3Q12996 717 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 HERC3Q15034 1050 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms