RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PROSER1Q86XN7 944 aa25.21■■□□□ 1.63
MSX1-201ENST00000382723 RARRES3Q9UL19 164 aa25.21■■□□□ 1.63
MSX1-201ENST00000382723 DSCR3O14972 297 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 FKBP6O75344 327 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 RPS26P62854 115 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 ZFP36L1Q07352 338 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 SLC13A2Q13183 592 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 SNCBQ16143 134 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 ZZZ3Q8IYH5 903 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 KAT2AQ92830 837 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 NCLNQ969V3 563 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 ANKRD9Q96BM1 317 aaPredicted RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 NEURL3Q96EH8 262 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 MVB12AQ96EY5 273 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 CHST8Q9H2A9 424 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 CLK4Q9HAZ1 481 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 ZCCHC3Q9NUD5 404 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 SIDT1Q9NXL6 827 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 CDC14AQ9UNH5 594 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 MRPS33Q9Y291 106 aaKnown RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 HCN4Q9Y3Q4 1203 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 COL5A1P20908 1838 aaPredicted RBP25.2■■□□□ 1.62
MSX1-201ENST00000382723 MC3RP41968 323 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 PRKAG1P54619 331 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 TRA2AQ13595 282 aaKnown RBP eCLIP25.2■■□□□ 1.62
MSX1-201ENST00000382723 CPZQ66K79 652 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 PTOV1Q86YD1 416 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 ADAMTS18Q8TE60 1221 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 TBC1D20Q96BZ9 403 aa25.2■■□□□ 1.62
MSX1-201ENST00000382723 A0A1B0GX78 115 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 OR2W5A6NFC9 320 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 EFCAB7A8K855 629 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 CXCR6O00574 342 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 GDF9O60383 454 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 JRKO75564 520 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 TIAF1O95411 115 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 PDX1P52945 283 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 AP2B1P63010 937 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 ADRM1Q16186 407 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 YOD1Q5VVQ6 348 aaPredicted RBP25.19■■□□□ 1.62
MSX1-201ENST00000382723 TMEM126BQ8IUX1 230 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 MAL2Q969L2 176 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 RAD21L1Q9H4I0 556 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 ANKRA2Q9H9E1 313 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 APMAPQ9HDC9 416 aa25.19■■□□□ 1.62
MSX1-201ENST00000382723 RHDQ02161 417 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 VAC14Q08AM6 782 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 PWWP2BQ6NUJ5 590 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 AAGABQ6PD74 315 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 ZNF595Q8IYB9 648 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 DOK4Q8TEW6 326 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 NSMCE2Q96MF7 247 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 ZNF304Q9HCX3 659 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 FAF1Q9UNN5 650 aaPredicted RBP25.18■■□□□ 1.62
MSX1-201ENST00000382723 TCRBV3S1A0A5B6 114 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 C8BP07358 591 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 FBLP22087 321 aaKnown RBP25.18■■□□□ 1.62
MSX1-201ENST00000382723 BTG2P78543 158 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 MRPS35P82673 323 aaKnown RBP25.18■■□□□ 1.62
MSX1-201ENST00000382723 VMACQ2NL98 169 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 TNFAIP8L2Q6P589 184 aaPredicted RBP25.18■■□□□ 1.62
MSX1-201ENST00000382723 AGBL5Q8NDL9 886 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 ELP4Q96EB1 424 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 CTRCQ99895 268 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 PRTFDC1Q9NRG1 225 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 TRPC4Q9UBN4 977 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 SRPK3Q9UPE1 567 aa25.18■■□□□ 1.62
MSX1-201ENST00000382723 AQP12BA6NM10 295 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 CLDN4O14493 209 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 SCRG1O75711 98 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 BAG2O95816 211 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 FHP07954 510 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 PRIM2P49643 509 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 POLE2P56282 527 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 FADDQ13158 208 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 TMEM64Q6YI46 380 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 AQP12AQ8IXF9 295 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 ENDOVQ8N8Q3 282 aaKnown RBP25.17■■□□□ 1.62
MSX1-201ENST00000382723 FAM162AQ96A26 154 aa25.17■■□□□ 1.62
MSX1-201ENST00000382723 PPWD1Q96BP3 646 aaKnown RBP25.17■■□□□ 1.62
MSX1-201ENST00000382723 LRP3O75074 770 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 TNFRSF21O75509 655 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 NT5EP21589 574 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 PPP2R1BP30154 601 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 STX4Q12846 297 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 DSG2Q14126 1118 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 GCNT6Q5T4J0 391 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 ARHGAP40Q5TG30 622 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 ERICH5Q6P6B1 374 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 RBM44Q6ZP01 1051 aaKnown RBP25.16■■□□□ 1.62
MSX1-201ENST00000382723 PPP1R3BQ86XI6 285 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 NETO1Q8TDF5 533 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 SPATA9Q9BWV2 254 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 C3orf14Q9HBI5 128 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 V9GYQ6 96 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 H3BNX3 289 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 EMC8O43402 210 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 CTNSO60931 367 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 MAOAP21397 527 aa25.16■■□□□ 1.62
MSX1-201ENST00000382723 TGM1P22735 817 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms