RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TIGD2Q4W5G0 525 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 RAD9BQ6WBX8 426 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ZDHHC13Q8IUH4 622 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 L3MBTL4Q8NA19 623 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 NUP43Q8NFH3 380 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TWIST2Q8WVJ9 160 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CLPTM1LQ96KA5 538 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 DCLRE1CQ96SD1 692 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 AP4S1Q9Y587 144 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TUBAL3A6NHL2 446 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 K7ESM1 405 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ABLIM3O94929 683 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 UNC5CO95185 931 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 C9P02748 559 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 HOXD9P28356 352 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 POU4F3Q15319 338 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 OCLNQ16625 522 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ALG10Q5BKT4 473 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TXNRD3NBQ6F5E7 133 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 PTCHD4Q6ZW05 846 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 PIWIL3Q7Z3Z3 882 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 PDZD3Q86UT5 571 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 OR11G2Q8NGC1 345 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CFHR5Q9BXR6 569 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 GRIP1Q9Y3R0 1128 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 LINC00854A0A1B0GVQ3 168 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ANKUB1A6NFN9 424 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 STAT5AP42229 794 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 STEAP3Q658P3 488 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TMEM184AQ6ZMB5 413 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 OR8H2Q8N162 312 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CHDHQ8NE62 594 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 DHRS4Q9BTZ2 278 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CXorf56Q9H5V9 222 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 HEY2Q9UBP5 337 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 SPATA2Q9UM82 520 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ANKRD26Q9UPS8 1709 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 RGPD8O14715 1765 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 IRGMA1A4Y4 181 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CBX7O95931 251 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TSPAN5P62079 268 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 AADACL2Q6P093 401 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 HSD11B1LQ7Z5J1 315 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 BMP8AQ7Z5Y6 402 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 EXTL1Q92935 676 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 FBXO17Q96EF6 278 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 GAL3ST1Q99999 423 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 TDRD1Q9BXT4 1180 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 CRISPLD1Q9H336 500 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 WSB2Q9NYS7 404 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 IRAK3Q9Y616 596 aa8.76□□□□□ -1.01
LIMCH1-202ENST00000381753 ENSAO43768 121 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PLIN3O60664 434 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 H2BFMP0C1H6 154 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 POU2F1P14859 743 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 UGT2B7P16662 529 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 EPHA8P29322 1005 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ARFRP1Q13795 201 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 KCNAB1Q14722 419 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NPTX1Q15818 432 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF676Q8N7Q3 588 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 OR9A2Q8NGT5 310 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TCP10LQ8TDR4 215 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF845Q96IR2 970 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NPY6RQ99463 290 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 P2RY12Q9H244 342 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ESRP2Q9H6T0 727 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC43A1O75387 559 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PLATP00750 562 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 LCATP04180 440 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SPARCP09486 303 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TACSTD2P09758 323 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PCSK2P16519 638 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC6A6P31641 620 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 EIF2S3P41091 472 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 KIAA1024LP59773 190 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 HTRA4P83105 476 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 KLRB1Q12918 225 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PDZK1Q5T2W1 519 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF57Q68EA5 555 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 HBMQ6B0K9 141 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 CYP2R1Q6VVX0 501 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 DHDDSQ86SQ9 333 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 LRRC34Q8IZ02 419 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SVOPQ8N4V2 548 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TMEM102Q8N9M5 508 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 F2RL3Q96RI0 385 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SCNM1Q9BWG6 230 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SDCBP2Q9H190 292 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SARDHQ9UL12 918 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PLEKHM1Q9Y4G2 1056 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PDGFBP01127 241 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 BCHEP06276 602 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 RPL11P62913 178 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SCAPQ12770 1279 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 GPR18Q14330 331 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 AGBL2Q5U5Z8 902 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 RSBN1Q5VWQ0 802 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 GPR153Q6NV75 609 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 FIGNL1Q6PIW4 674 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms