RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ARHGAP22Q7Z5H3 698 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 NET1Q7Z628 596 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SNX32Q86XE0 403 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 NRROSQ86YC3 692 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 LAS2Q8IYD9 372 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SYTL1Q8IYJ3 562 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 LGI4Q8N135 537 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 Q8N1Y9 231 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 DPP10Q8N608 796 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SNX31Q8N9S9 440 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 Q8NA96 180 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 ABHD11Q8NFV4 315 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 TTLQ8NG68 377 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 WDR20Q8TBZ3 569 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PATE1Q8WXA2 126 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SMPDL3AQ92484 453 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 DIO2Q92813 273 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CXorf40BQ96DE9 158 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CMTM7Q96FZ5 175 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 ZNF764Q96H86 408 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PKP4Q99569 1192 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 HOPXQ9BPY8 73 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SARGQ9BW04 601 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CADM1Q9BY67 442 aaKnown RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 GSDMCQ9BYG8 508 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SHCBP1LQ9BZQ2 653 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 TGIF2Q9GZN2 237 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 MUC13Q9H3R2 512 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 NT5DC2Q9H857 520 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SLC40A1Q9NP59 571 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SPAG4Q9NPE6 437 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 FBXO8Q9NRD0 319 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 C1orf109Q9NX04 203 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 OR6C2Q9NZP2 312 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 TAAR2Q9P1P5 351 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PDP2Q9P2J9 529 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CROTQ9UKG9 612 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SLC22A14Q9Y267 594 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 NDUFAF1Q9Y375 327 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PCDHGA9Q9Y5G4 932 aaKnown RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 COLEC10Q9Y6Z7 277 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CACNA1DQ01668 2161 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 KIR2DS5A0A0G2JLQ3 304 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 A0A0G2JNG1 304 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 A0A1W2PP18 115 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 A6NCN8 305 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 KIR2DS3K7RE56 304 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PPP6CO00743 305 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ANGPT2O15123 496 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 POLR1CO15160 346 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PPM1DO15297 605 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 CFLARO15519 480 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 NRP2O60462 931 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 EEDO75530 441 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 SLC22A3O75751 556 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 CIB2O75838 187 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 IL6P05231 212 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ALDOCP09972 364 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 LINC00032P0C843 101 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 MTHFD1P11586 935 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ACP5P13686 325 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 HOXB6P17509 224 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 TSPAN8P19075 237 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PRDX3P30048 256 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PKLRP30613 574 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 SHMT2P34897 504 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PGM1P36871 562 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 RPL3P39023 403 aaKnown RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ARL1P40616 181 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ASMTP46597 345 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 BDKRB1P46663 353 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 MTTPP55157 894 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 KCNK10P57789 538 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 KCNJ2P63252 427 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ELF3P78545 371 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 RELAQ04206 551 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 SF3A3Q12874 501 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ABRQ12979 859 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 CHIT1Q13231 466 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 NAE1Q13564 534 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 GRB7Q14451 532 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 KIR2DS5Q14953 304 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 ABRAXAS2Q15018 415 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 RPS6KA2Q15349 733 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 HIST2H2ACQ16777 129 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 IMPG1Q17R60 797 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 TMEM198Q66K66 360 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 CPZQ66K79 652 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 HIST2H2AA3Q6FI13 130 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 JMJD6Q6NYC1 403 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 C8orf82Q6P1X6 216 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 MED27Q6P2C8 311 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 PGM2L1Q6PCE3 622 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 DOK6Q6PKX4 331 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 C6orf15Q6UXA7 325 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 MBOAT1Q6ZNC8 495 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 FAM83HQ6ZRV2 1179 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-201ENST00000355766 Q6ZSR9 355 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 IKBIPQ70UQ0 350 aa6.58□□□□□ -1.36
VPS13A-201ENST00000355766 RPS27LQ71UM5 84 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms