RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 FCRL1Q96LA6 429 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 EFCAB11Q9BUY7 163 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 TMED9Q9BVK6 235 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 EGLN3Q9H6Z9 239 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 MOV10Q9HCE1 1003 aaKnown RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 FKBP14Q9NWM8 211 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 IL36AQ9UHA7 158 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 PCM1Q15154 2024 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 CPNE3O75131 537 aaKnown RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 LATS1O95835 1130 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 PSKH1P11801 424 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 MYL12AP19105 171 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 SNRPD2P62316 118 aaKnown RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 INSL4Q14641 139 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 ZNF750Q32MQ0 723 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 NLGN4YQ8NFZ3 816 aaPredicted RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 IRF7Q92985 503 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 NELL2Q99435 816 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 TRMT61BQ9BVS5 477 aaKnown RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 SPATA9Q9BWV2 254 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 HDHD5Q9BXW7 423 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 CPEB1Q9BZB8 566 aaKnown RBP13.67□□□□□ -0.22
CPSF7-201ENST00000340437 TM7SF3Q9NS93 570 aa13.67□□□□□ -0.22
CPSF7-201ENST00000340437 GSAPA4D1B5 854 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CASKO14936 926 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PDPK1O15530 556 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ELAVL4P26378 380 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 OPRD1P41143 372 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ETV5P41161 510 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ETV1P50549 477 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SCN1BQ07699 218 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 GPAT3Q53EU6 434 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PRAMEF14Q5SWL7 426 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PRAMEF13Q5VWM6 474 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ACSM5Q6NUN0 579 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 RRM2BQ7LG56 351 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 UBQLNLQ8IYU4 475 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 KLK6Q92876 244 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 TIFAQ96CG3 184 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CDCA4Q9BXL8 241 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CREBZFQ9NS37 354 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 RPL36Q9Y3U8 105 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 OR6C70A6NIJ9 312 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 WASH3PC4AMC7 463 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 OR1F1O43749 312 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SEMA7AO75326 666 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ZNF30P17039 623 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 UQCRC2P22695 453 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PTX3P26022 381 aaPredicted RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 APEX1P27695 318 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CCT3P49368 545 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PNLIPRP1P54315 467 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 PODNL1Q6PEZ8 512 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ADIPOR2Q86V24 386 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 LAPTM4BQ86VI4 370 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SLC39A11Q8N1S5 342 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 AMER3Q8N944 861 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 ASCC1Q8N9N2 400 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 VN1R2Q8NFZ6 395 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 RAD9AQ99638 391 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 MND1Q9BWT6 205 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 C11orf54Q9H0W9 315 aaPredicted RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 THSD1Q9NS62 852 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CDH23Q9H251 3354 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SMLR1H3BR10 107 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SCG5P05408 212 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 EPHX1P07099 455 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 SDHBP21912 280 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 RFX2P48378 723 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 RPS25P62851 125 aaKnown RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 KIAA1161Q6NSJ0 714 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 KREMEN2Q8NCW0 462 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 XKR8Q9H6D3 395 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 TEX10Q9NXF1 929 aaPredicted RBP13.66□□□□□ -0.22
CPSF7-201ENST00000340437 CNIH4Q9P003 139 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 STUB1Q9UNE7 303 aa13.66□□□□□ -0.22
CPSF7-201ENST00000340437 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 ANTXRLA6NF34 631 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 HEPACAM2A8MVW5 462 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 MPZL2O60487 215 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 ST8SIA6P61647 398 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 LARS2Q15031 903 aaKnown RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 ZNF79Q15937 498 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 RNASE12Q5GAN4 147 aaKnown RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 SYCE2Q6PIF2 218 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 PARS2Q7L3T8 475 aaKnown RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 ATP6V1C2Q8NEY4 427 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 FLCNQ8NFG4 579 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 TBX5Q99593 518 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 NXF2Q9GZY0 626 aaKnown RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 ZCCHC3Q9NUD5 404 aaKnown RBP13.65□□□□□ -0.22
CPSF7-201ENST00000340437 GIMAP4Q9NUV9 329 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 XIRP2A4UGR9 3374 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 A0A0C4DFX4 3053 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 PLPP1O14494 284 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 SYN1P17600 705 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 CRYBB2P43320 205 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 PRLHRP49683 370 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 NCF4Q15080 339 aa13.65□□□□□ -0.22
CPSF7-201ENST00000340437 PHC2Q8IXK0 858 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms