RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 OR1B1Q8NGR6 318 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 RNASE8Q8TDE3 154 aaKnown RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 PCNPQ8WW12 178 aaKnown RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 RASL10AQ92737 203 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ATP6V0A1Q93050 837 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 NABP1Q96AH0 204 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 PKNOX2Q96KN3 472 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ANKRD27Q96NW4 1050 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 TAAR6Q96RI8 345 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 TNFRSF13CQ96RJ3 184 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 TRIM6Q9C030 488 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 XPO4Q9C0E2 1151 aaKnown RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 WWP1Q9H0M0 922 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 GANQ9H2C0 597 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 TMEM245Q9H330 911 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 HEXA-AS1Q9H8Q6 139 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 PRMT8Q9NR22 394 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 DEPPQ9NTK1 212 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ODF2LQ9ULJ1 636 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 AUP1Q9Y679 476 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 NPHP4O75161 1426 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-201ENST00000326004 CNTLNQ9NXG0 1405 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 RICTORQ6R327 1708 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 ZMYM4Q5VZL5 1548 aa2.73□□□□□ -1.97
HMGB1-201ENST00000326004 LRRC9Q6ZRR7 1453 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 HECW1Q76N89 1606 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TRGV8A0A0C4DH27 118 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 IGLON5A6NGN9 336 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 K7EQG2 157 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 PI15O43692 258 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 POLR1AO95602 1720 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 OLFM2O95897 454 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 PDGFBP01127 241 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 IGHV3-13P01766 116 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 IGHG1P01857 330 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 PTMAP06454 111 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 FHP07954 510 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TPBGLP0DKB5 382 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF18P17022 549 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 FCARP24071 287 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 LMO2P25791 158 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SHC1P29353 583 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SLC12A3P55017 1021 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 PEX3P56589 373 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SLC8A3P57103 927 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 YBEYP58557 167 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 CDKL1Q00532 357 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 MSLNQ13421 630 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 LASP1Q14847 261 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 LPAL2Q16609 132 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 MPPE1Q53F39 396 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 DDI2Q5TDH0 399 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 FBXL22Q6P050 247 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 Q6ZRG5 221 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TOM1L2Q6ZVM7 507 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TMUB2Q71RG4 321 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 LMNTD2Q8IXW0 634 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SFRP1Q8N474 314 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 BANPQ8N9N5 519 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SSC4DQ8WTU2 575 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TAF15Q92804 592 aaKnown RBP eCLIP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SLCO4A1Q96BD0 722 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 PCED1BQ96HM7 432 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF597Q96LX8 424 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 NAP1L5Q96NT1 182 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 RCHY1Q96PM5 261 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 ATP6V0BQ99437 205 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 NAP1L3Q99457 506 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 RBM24Q9BX46 236 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 JPT2Q9H910 190 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 GDF3Q9NR23 364 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 CYP39A1Q9NYL5 469 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 TECRQ9NZ01 308 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 MRTO4Q9UKD2 239 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 APPL1Q9UKG1 709 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 RARRES3Q9UL19 164 aa2.72□□□□□ -1.97
HMGB1-201ENST00000326004 NIP7Q9Y221 180 aaKnown RBP eCLIP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 MRPS2Q9Y399 296 aaKnown RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF142P52746 1687 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-201ENST00000326004 SCAF11Q99590 1463 aaKnown RBP2.71□□□□□ -1.97
HMGB1-201ENST00000326004 ABCA7Q8IZY2 2146 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 NEURL4Q96JN8 1562 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TRBV5-4A0A0C4DH59 114 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TRBV2A0A0J9YWF9 115 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 LOC390937A0A1W2PQ73 354 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 NEDD8-MDP1E9PL57 170 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CHEK1O14757 476 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ATP6V1G1O75348 118 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CSO75390 466 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 GMNNO75496 209 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 B3GALNT1O75752 331 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TXNDC12O95881 172 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TBX6O95947 436 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 HMOX1P09601 288 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 B4GALT1P15291 398 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 AREGP15514 252 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 UGT1A6P19224 532 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ETV5P41161 510 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CD86P42081 329 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SLC1A4P43007 532 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms