RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SLC22A18Q96BI1 424 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 ELMOD3Q96FG2 381 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 CARS2Q9HA77 564 aaKnown RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 RGS9O75916 674 aaPredicted RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 FARS2O95363 451 aaKnown RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 EDN1P05305 212 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 GKP32189 559 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 CLCNKAP51800 687 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 FXYD6P3P58550 94 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TAS2R50P59544 299 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 NFATC2Q13469 925 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 SPCS2Q15005 226 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 PLEKHN1Q494U1 663 aaPredicted RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 AADACL4Q5VUY2 407 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TP53INP2Q8IXH6 220 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 DTX3Q8N9I9 347 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 GRHL3Q8TE85 626 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TMEM174Q8WUU8 243 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 IRF7Q92985 503 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 GAS2L1Q99501 681 aaPredicted RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 SLC30A3Q99726 388 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TMEM5Q9Y2B1 443 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 CD8B2A6NJW9 211 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 F8W036 122 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 B4GAT1O43505 415 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 MMP20O60882 483 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 S1PR4O95977 384 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CD8BP10966 210 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 BCKDHAP12694 445 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CAPN3P20807 821 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ALAS2P22557 587 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SLC6A6P31641 620 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 BLOC1S1P78537 153 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SF3A2Q15428 464 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 RTP2Q5QGT7 225 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 Q6ZVL8 140 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SMPDL3AQ92484 453 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 OTUB2Q96DC9 234 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 PGAP3Q96FM1 320 aaPredicted RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 IL37Q9NZH6 218 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 A0A0G2JN53 185 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CCDC85CA6NKD9 419 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 A8MU76 341 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 B3GALT2O43825 422 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 FMO6PO60774 539 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 STC2O76061 302 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 JUNP05412 331 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 NDUFS1P28331 727 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 BDKRB1P46663 353 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ZNF763Q0D2J5 394 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 GRM2Q14416 872 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 POU4F3Q15319 338 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 KRBOX4Q5JUW0 171 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SLC8B1Q6J4K2 584 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 NUP54Q7Z3B4 507 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 TFGQ92734 400 aaPredicted RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 GTF2H4Q92759 462 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CHFRQ96EP1 664 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SORT1Q99523 831 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 DHRS4Q9BTZ2 278 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 TRMT61BQ9BVS5 477 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 ZNF436Q9C0F3 470 aaPredicted RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 MRPS17Q9Y2R5 130 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 BACE2Q9Y5Z0 518 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 MYH7BA7E2Y1 1941 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 M0QZQ0 153 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CYB5AP00167 134 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 RETP07949 1114 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 RHCEP18577 417 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 PRKXP51817 358 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 PM20D1Q6GTS8 502 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 VTCN1Q7Z7D3 282 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 C3orf58Q8NDZ4 430 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 LRR1Q96L50 414 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ZNF778Q96MU6 729 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 HDHD5Q9BXW7 423 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 OR10A4Q9H209 315 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CCDC86Q9H6F5 360 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 ZNF304Q9HCX3 659 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 MYNNQ9NPC7 610 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 PCDHB11Q9Y5F2 797 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 NUPL2O15504 423 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 CRHBPP24387 322 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 GJA5P36382 358 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 BLKP51451 505 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ACTC1P68032 377 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ACTA1P68133 377 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 FGL2Q14314 439 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 MINDY4Q4G0A6 757 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 ATAD3CQ5T2N8 411 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 SFRP4Q6FHJ7 346 aaPredicted RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 FAM217AQ8IXS0 508 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 GTPBP8Q8N3Z3 284 aaPredicted RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 OR56A1Q8NGH5 318 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 PXYLP1Q8TE99 480 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 CNOT9Q92600 299 aaKnown RBP11.01□□□□□ -0.65
VPS39-201ENST00000318006 MED30Q96HR3 178 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 RBCK1Q9BYM8 510 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 REEP4Q9H6H4 257 aa11.01□□□□□ -0.65
VPS39-201ENST00000318006 KCNIP3Q9Y2W7 256 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms