RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 B3GNT5Q9BYG0 378 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CLMPQ9H6B4 373 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 IPPKQ9H8X2 491 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 NIT2Q9NQR4 276 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SEMA3GQ9NS98 782 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 LTBP1Q14766 1721 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ANKUB1A6NFN9 424 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ANKRD61A6NGH8 418 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MAGEB17A8MXT2 336 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SCGB2A1O75556 95 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CYB5AP00167 134 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CATP04040 527 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 HLA-DQB2P05538 268 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ENDOUP21128 410 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CSNK1DP48730 415 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MRPS10P82664 201 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 TARDBPQ13148 414 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS35-201ENST00000299138 DGKZQ13574 1117 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GTF2H2Q13888 395 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TMEM236Q5W0B7 351 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GTF2H2CQ6P1K8 395 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DET1Q7L5Y6 550 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 NOXA1Q86UR1 476 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TRAPPC5Q8IUR0 188 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PTERQ96BW5 349 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 KCTD7Q96MP8 289 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SEMA3CQ99985 751 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 VRK1Q99986 396 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 EFCAB11Q9BUY7 163 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PRRG4Q9BZD6 226 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 HIPK2Q9H2X6 1198 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SMURF2Q9HAU4 748 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PLEKHA3Q9HB20 300 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACSS2Q9NR19 701 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 THSD1Q9NS62 852 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DCAF16Q9NXF7 216 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ARL15Q9NXU5 204 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PSORS1C1Q9UIG5 152 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 RIPK3Q9Y572 518 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DNAJC25-GNG10A0A024R161 153 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 RIIAD1A6NNX1 92 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 E7EQ34 232 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CIDEAO60543 219 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 IFNA5P01569 189 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 IFNW1P05000 195 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 HTR1BP28222 390 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 HOXD11P31277 338 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 NDUFA6P56556 154 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SH3BP2P78314 561 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ARHGAP1Q07960 439 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PMPCAQ10713 525 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GAS6Q14393 721 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MBTPS1Q14703 1052 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DUSP6Q16828 381 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SPIN4Q56A73 249 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DPY19L4Q7Z388 723 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GLT6D1Q7Z4J2 308 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 C12orf29Q8N999 325 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CXorf40AQ8TE69 158 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TAAR8Q969N4 342 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CPPED1Q9BRF8 314 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 UCK2Q9BZX2 261 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PITHD1Q9GZP4 211 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 FZD3Q9NPG1 666 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 EQTNQ9NQ60 294 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PRDM9Q9NQV7 894 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACSL6Q9UKU0 697 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SCML2Q9UQR0 700 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 A0A1B0GVM2 712 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 C17orf102A2RUQ5 167 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ANKRD34BA5PLL1 514 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TMEM189-UBE2V1I3L0A0 370 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MANBAO00462 879 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GNRHRP30968 328 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CTNNB1P35222 781 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 RAB35Q15286 201 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CLVS2Q5SYC1 327 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PDSS1Q5T2R2 415 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 WDR74Q6RFH5 385 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 SLC16A12Q6ZSM3 486 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GTPBP8Q8N3Z3 284 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 ARL14Q8N4G2 192 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ISG20Q96AZ6 181 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 TMEM159Q96B96 161 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MRPL38Q96DV4 380 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 ZC3HAV1LQ96H79 300 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CRB3Q9BUF7 120 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 KIAA1522Q9P206 1035 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 DRGXA6NNA5 263 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 YJEFN3A6XGL0 299 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZNF207O43670 478 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 LCMT2O60294 686 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 FADS1O60427 444 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ALDOCP09972 364 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 SPATA31D3P0C874 917 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MAKP20794 623 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ADH6P28332 368 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MAP3K8P41279 467 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR12D2P58182 307 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 TAS2R43P59537 309 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms