RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ARRDC5A6NEK1 342 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 WASHC1A8K0Z3 465 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 PCDH17O14917 1159 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 PROM1O43490 865 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 RECKO95980 971 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 CSNK2A2P19784 350 aaPredicted RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 GGT2P36268 569 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 BTN3A2P78410 334 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 GNA13Q14344 377 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 PUM1Q14671 1186 aaKnown RBP eCLIP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 MAPK11Q15759 364 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 NPTX1Q15818 432 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 SYPL1Q16563 259 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 COLEC12Q5KU26 742 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 C18orf63Q68DL7 685 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 CCDC71Q8IV32 467 aaPredicted RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 ENTHD1Q8IYW4 607 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 GPR32P1Q8NGA4 272 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 OR56A1Q8NGH5 318 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 NT5CQ8TCD5 201 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 IPCEF1Q8WWN9 437 aaPredicted RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 FAM3CQ92520 227 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 CNRIP1Q96F85 164 aaPredicted RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 ZNF354BQ96LW1 612 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 COL21A1Q96P44 957 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 ALPK1Q96QP1 1244 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 NIPSNAP1Q9BPW8 284 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 TREX2Q9BQ50 279 aaPredicted RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 DGCR6LQ9BY27 220 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 SYNPO2LQ9H987 977 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 RLIMQ9NVW2 624 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 KCND3Q9UK17 655 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 PSME2Q9UL46 239 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 MTCH2Q9Y6C9 303 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 ZNF780BQ9Y6R6 833 aa12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 GOLGA4Q13439 2230 aaKnown RBP12.22□□□□□ -0.45
SPTLC1-201ENST00000262554 TRIM64BA6NI03 449 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 ZNF99A8MXY4 864 aaPredicted RBP12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 AXIN1O15169 862 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 RGS10O43665 173 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 PCDHGA12O60330 932 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 TNFP01375 233 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 FHP07954 510 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 SLC35G6P0C7Q6 338 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CCNA2P20248 432 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CD72P21854 359 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 MPIP34949 423 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 KRT20P35900 424 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 RABIFP47224 123 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 KCNJ5P48544 419 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CRISP3P54108 245 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 PRKAG1P54619 331 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 PRR5P85299 388 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 TFF2Q03403 129 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 EMX1Q04741 257 aaPredicted RBP12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CCINQ13939 588 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 COL19A1Q14993 1142 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 GPR19Q15760 415 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 LAIR1Q6GTX8 287 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 DHRS4L2Q6PKH6 230 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 VN1R4Q7Z5H5 301 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 NRROSQ86YC3 692 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 P3H2Q8IVL5 708 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CCDC116Q8IYX3 515 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 SVOPQ8N4V2 548 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 KCT2Q8NC54 265 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 OR9Q2Q8NGE9 314 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 OR5D16Q8NGK9 328 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 OR2A14Q96R47 310 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 SPATA5L1Q9BVQ7 753 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 ROGDIQ9GZN7 287 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 USP36Q9P275 1121 aaKnown RBP12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 RHCGQ9UBD6 479 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 CES1P1Q9UKY3 287 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 RNF6Q9Y252 685 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 NINQ8N4C6 2090 aa12.21□□□□□ -0.45
SPTLC1-201ENST00000262554 A0A1W2PPW3 197 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 GSAPA4D1B5 854 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 OR2A25A4D2G3 310 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 PRAMEF26H0Y7S4 382 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 H3BQ06 376 aaPredicted RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 TNFSF14O43557 240 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 NDUFS2O75306 463 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 WBP4O75554 376 aaKnown RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 VIPP01282 170 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 ZNF888P0CJ79 500 aaPredicted RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 UGT2B7P16662 529 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 CBLP22681 906 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 FEN1P39748 380 aaKnown RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 LIM2P55344 173 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 SMN1Q16637 294 aaKnown RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 Q6ZPB1 254 aaPredicted RBP12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 DEPDC4Q8N2C3 294 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 PARP8Q8N3A8 854 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 FLVCR1-AS1Q8TAF5 88 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 BBS10Q8TAM1 723 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 SUN3Q8TAQ9 357 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 FAM81AQ8TBF8 368 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 FAR1Q8WVX9 515 aa12.21□□□□□ -0.46
SPTLC1-201ENST00000262554 ZFPM2Q8WW38 1151 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms