RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GDF6Q6KF10 455 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 LIPIQ6XZB0 460 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ZNF730Q6ZMV8 503 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 CFAP77Q6ZQR2 320 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ADGRD2Q7Z7M1 963 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 DNAJA4Q8WW22 397 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 WDFY2Q96P53 400 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 AP5M1Q9H0R1 490 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 B3GNT2Q9NY97 397 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 RPL36Q9Y3U8 105 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 RALGAPA2Q2PPJ7 1873 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 KCNE1BA0A087WTH5 132 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 M0QZQ0 153 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 LGALS8O00214 317 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 CHP2O43745 196 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 OR12D1P0DN82 309 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 IDSP22304 550 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 XCR1P46094 333 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 MAP2K6P52564 334 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 GPR176Q14439 515 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 GRB14Q14449 540 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 TEAD4Q15561 434 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 KIAA1161Q6NSJ0 714 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 ACSM5Q6NUN0 579 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 CERS6Q6ZMG9 384 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 NEIL3Q8TAT5 605 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 TRPM5Q9NZQ8 1165 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 CLCA2Q9UQC9 943 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 SH3D21A4FU49 640 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 SEMA7AO75326 666 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 NR2F6P10588 404 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 ELK1P19419 428 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 XPAP23025 273 aaPredicted RBP13.65□□□□□ -0.22
SDC1-201ENST00000254351 SLC11A2P49281 568 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 GINS1Q14691 196 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 DCST1Q5T197 706 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 KCTD20Q7Z5Y7 419 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 PLEKHH3Q7Z736 793 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 OR8J2Q8NGG1 315 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 HMGB4Q8WW32 186 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 GEMIN6Q8WXD5 167 aaKnown RBP13.65□□□□□ -0.22
SDC1-201ENST00000254351 SUSD3Q96L08 255 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 ZFP3Q96NJ6 502 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 MCCC2Q9HCC0 563 aa13.65□□□□□ -0.22
SDC1-201ENST00000254351 ZSWIM8A7E2V4 1837 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 A0A1W2PPK0 400 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 TMEM202A6NGA9 273 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 C5orf58C9J3I9 102 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 RGS11O94810 467 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 IL1AP01583 271 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 PREPP48147 710 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 CCR6P51684 374 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 CLDN20P56880 219 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 KCNA10Q16322 511 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 ZNF628Q5EBL2 1059 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 FAM27D1Q5T7N8 215 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 NCEH1Q6PIU2 408 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 C17orf99Q6UX52 265 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 TMPRSS11BQ86T26 416 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 ZNF784Q8NCA9 323 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 TOR1AIP2Q8NFQ8 470 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 OR4F15Q8NGB8 312 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 C12orf66Q96MD2 445 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 CHST8Q9H2A9 424 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 CLEC4MQ9H2X3 399 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 TMEM245Q9H330 911 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 EGLN3Q9H6Z9 239 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 SLC25A19Q9HC21 320 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 SEMA3GQ9NS98 782 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 NUP50Q9UKX7 468 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 ENPP4Q9Y6X5 453 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 M0R3H8 397 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 HOXB6P17509 224 aaKnown RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 MVDP53602 400 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 RAE1P78406 368 aaKnown RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 DSC1Q08554 894 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 MLLT11Q13015 90 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 ZNF467Q7Z7K2 595 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 PIAS4Q8N2W9 510 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 PGBD3Q8N328 593 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 WFDC5Q8TCV5 224 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 MSLNLQ96KJ4 702 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 TMEM43Q9BTV4 400 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 GBF1Q92538 1859 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 MYO16Q9Y6X6 1858 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 E9PQ18 207 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 SSNA1O43805 119 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 TBL1XO60907 577 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 GATBO75879 557 aaKnown RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 CD3GP09693 182 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 OSMP13725 252 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 ARHGDIBP52566 201 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 GRM7Q14831 915 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 AANATQ16613 207 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 POM121L1PQ3SYA9 428 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 RSPO2Q6UXX9 243 aaPredicted RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 NXPE1Q8N323 547 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 PROKR2Q8NFJ6 384 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 AP3S1Q92572 193 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 WRAP53Q9BUR4 548 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms