RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 DEFB115Q30KQ5 88 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FAM106AQ4KMX7 169 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FAM46CQ5VWP2 391 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SHEQ5VZ18 495 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RPUSD3Q6P087 351 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CASC4Q6P4E1 433 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 C16orf54Q6UWD8 224 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 DHRS11Q6UWP2 260 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CLEC4GQ6UXB4 293 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LEKR1Q6ZMV7 388 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZNF841Q6ZN19 808 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FRRS1Q6ZNA5 592 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GDPGP1Q6ZNW5 385 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RBPMS2Q6ZRY4 209 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RFPL4BQ6ZWI9 263 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TRMT11Q7Z4G4 463 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PRUNE1Q86TP1 453 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 METTL23Q86XA0 190 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FAM131BQ86XD5 332 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RNF130Q86XS8 419 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 KRTAP11-1Q8IUC1 163 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 C4orf19Q8IY42 314 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 APCDD1Q8J025 514 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CERS5Q8N5B7 392 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 Q8NFD4 153 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 OR9Q2Q8NGE9 314 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 C11orf45Q8TAV5 145 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SPPL2AQ8TCT8 520 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MIPOL1Q8TD10 442 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NPRL2Q8WTW4 380 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GATAD1Q8WUU5 269 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZNRF4Q8WWF5 429 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SEPT1Q8WYJ6 367 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TOMM40LQ969M1 308 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RFT1Q96AA3 541 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RBM41Q96IZ5 413 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CCDC114Q96M63 670 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FER1L6-AS2Q96M78 137 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PRICKLE1Q96MT3 831 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SPATA33Q96N06 139 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZNF577Q9BSK1 485 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ALKBH7Q9BT30 221 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PI4K2AQ9BTU6 479 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SLC25A23Q9BV35 468 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 THUMPD3Q9BV44 507 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 IDI2Q9BXS1 227 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LRRCC1Q9C099 1032 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 STRADBQ9C0K7 418 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CUEDC2Q9H467 287 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ST6GALNAC4Q9H4F1 302 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MINDY3Q9H8M7 445 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 HEXA-AS1Q9H8Q6 139 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 Q9H8V8 135 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MTHFD2LQ9H903 347 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GRPEL1Q9HAV7 217 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RAVER2Q9HCJ3 691 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SH3GLB2Q9NR46 395 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PHPT1Q9NRX4 125 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GPR83Q9NYM4 423 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CLIC5Q9NZA1 410 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 C5AR2Q9P296 337 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TMEM181Q9P2C4 612 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 KLK11Q9UBX7 282 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CLIP2Q9UDT6 1046 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ARMCX3Q9UH62 379 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ELF5Q9UKW6 265 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RARRES3Q9UL19 164 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 AGTPBP1Q9UPW5 1226 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SATB2Q9UPW6 733 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZNF510Q9Y2H8 683 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 WIPI2Q9Y4P8 454 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CSAG2Q9Y5P2 127 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LIPGQ9Y5X9 500 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 STYXL1Q9Y6J8 313 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 DDX49Q9Y6V7 483 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NCOR1O75376 2440 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MED23Q9ULK4 1368 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NUMA1Q14980 2115 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PFASO15067 1338 aa0.9□□□□□ -2.26
SMARCB1-209ENST00000635578 IL16Q14005 1332 aa0.9□□□□□ -2.26
SMARCB1-209ENST00000635578 PCDH15Q96QU1 1955 aa0.9□□□□□ -2.26
SMARCB1-209ENST00000635578 FER1L5A0AVI2 2057 aa0.9□□□□□ -2.26
SMARCB1-209ENST00000635578 AGRNO00468 2067 aa0.9□□□□□ -2.26
SMARCB1-209ENST00000635578 NCKAP5O14513 1909 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 CROCCQ5TZA2 2017 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 C2orf92A0A1B0GVN3 265 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 TRIM49BA6NDI0 452 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 MPTX1A8MV57 137 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 SHISA9B4DS77 424 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 NEDD8-MDP1E9PL57 170 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 NPIPB9F8W1W9 429 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 K7ERI5 159 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 O00370 1275 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 CTDSPLO15194 276 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 WDR46O15213 610 aaKnown RBP0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 SIGLEC5O15389 551 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 LRRTM2O43300 516 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 TIMM44O43615 452 aa0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 DKC1O60832 514 aaKnown RBP eCLIP0.9□□□□□ -2.27
SMARCB1-209ENST00000635578 FCGR3BO75015 233 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms