RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 COPS7AQ9UBW8 275 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 CSAG2Q9Y5P2 127 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 OR5H15A6NDH6 313 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 WASHC1A8K0Z3 465 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 DHRS4L1P0CG22 281 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 SLC35E2P0CK97 266 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 TIA1P31483 386 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-240ENST00000631023 GALNSP34059 522 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 TNFSF10P50591 281 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 MLLT10P55197 1068 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 SH2D4BQ5SQS7 431 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 RNF165Q6ZSG1 346 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 BEST3Q8N1M1 668 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 Q8NA96 180 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 OR1N1Q8NGS0 311 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 OR6Y1Q8NGX8 325 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 SUN3Q8TAQ9 357 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 FAM76AQ8TAV0 307 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 SLC2A12Q8TD20 617 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 UCN3Q969E3 161 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 PPWD1Q96BP3 646 aaKnown RBP19.3■□□□□ 0.68
CLN3-240ENST00000631023 PKNOX2Q96KN3 472 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 SHANK1Q9Y566 2161 aa19.3■□□□□ 0.68
CLN3-240ENST00000631023 TRAV17A0A0B4J275 112 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 FCHO1O14526 889 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 SERPINE1P05121 402 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 ANXA4P09525 319 aaPredicted RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 DRD2P14416 443 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 XKP51811 444 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 MAGOHP61326 146 aaKnown RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 RAE1P78406 368 aaKnown RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 MPP2Q14168 576 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 HEPACAMQ14CZ8 416 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 CHI3L2Q15782 390 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 HHATQ5VTY9 493 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 SLC48A1Q6P1K1 146 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 HSDL2Q6YN16 418 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 CATSPER1Q8NEC5 780 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 RIT1Q92963 219 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 C11orf24Q96F05 449 aaPredicted RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 PAIP2Q9BPZ3 127 aaKnown RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 UTP23Q9BRU9 249 aaKnown RBP19.29■□□□□ 0.68
CLN3-240ENST00000631023 DLGAP4Q9Y2H0 992 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 DNAJC15Q9Y5T4 150 aa19.29■□□□□ 0.68
CLN3-240ENST00000631023 TMEM120BA0PK00 339 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 TMEM114B3SHH9 223 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 J3QKU1 62 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 SEC22BO75396 215 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 SNUPNO95149 360 aaKnown RBP19.28■□□□□ 0.68
CLN3-240ENST00000631023 DDAH2O95865 285 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 F10P00742 488 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 PRPH2P23942 346 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 GRK2P25098 689 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 ALDH9A1P49189 494 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 SLC18A1P54219 525 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 MLF1P58340 268 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 HDXQ7Z353 690 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 ARMC10Q8N2F6 343 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 HORMAD2Q8N7B1 307 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 ANKRD42Q8N9B4 389 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 CPT1CQ8TCG5 803 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 TLCD1Q96CP7 247 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 SENP5Q96HI0 755 aaPredicted RBP19.28■□□□□ 0.68
CLN3-240ENST00000631023 NPAS2Q99743 824 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 PFDN4Q9NQP4 134 aa19.28■□□□□ 0.68
CLN3-240ENST00000631023 HELZ2Q9BYK8 2649 aaKnown RBP19.28■□□□□ 0.68
CLN3-240ENST00000631023 GABRR3A8MPY1 467 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 NPIPB8E9PQR5 432 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 HSPA4LO95757 839 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ZNF763Q0D2J5 394 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 UGT3A2Q3SY77 523 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 AGBL2Q5U5Z8 902 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 DDIASQ8IXT1 998 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 OR5L2Q8NGL0 311 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 OR8K3Q8NH51 312 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 AGR3Q8TD06 166 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ZNF721Q8TF20 911 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 C16orf78Q8WTQ4 265 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 THAP3Q8WTV1 239 aaPredicted RBP19.27■□□□□ 0.68
CLN3-240ENST00000631023 TWIST2Q8WVJ9 160 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 FBXL20Q96IG2 436 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 EBPLQ9BY08 206 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 LRTM1Q9HBL6 345 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-240ENST00000631023 C1orf109Q9NX04 203 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 NKIRAS1Q9NYS0 192 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ZNF223Q9UK11 482 aaPredicted RBP19.27■□□□□ 0.68
CLN3-240ENST00000631023 CES1P1Q9UKY3 287 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 WBP11Q9Y2W2 641 aaKnown RBP19.27■□□□□ 0.68
CLN3-240ENST00000631023 CCL27Q9Y4X3 112 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 PCDHGA10Q9Y5H3 936 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ZNF780BQ9Y6R6 833 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ZGRF1Q86YA3 2104 aa19.27■□□□□ 0.68
CLN3-240ENST00000631023 ERAL1O75616 437 aaKnown RBP19.27■□□□□ 0.67
CLN3-240ENST00000631023 IL3P08700 152 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 LINC00032P0C843 101 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 CPMP14384 443 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 H2AFXP16104 143 aaPredicted RBP19.27■□□□□ 0.67
CLN3-240ENST00000631023 PORP16435 677 aaPredicted RBP19.27■□□□□ 0.67
CLN3-240ENST00000631023 OC90Q02509 493 aaPredicted RBP19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms