RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ABCG4Q9H172 646 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 SMOC2Q9H3U7 446 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 RGPD5Q99666 1765 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 DDX60Q8IY21 1712 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 OR6C74A6NCV1 312 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 A8MU76 341 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 SAP18O00422 153 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 FRKP42685 505 aaPredicted RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 CDC20Q12834 499 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 VEZF1Q14119 521 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 AADACL4Q5VUY2 407 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 JAGN1Q8N5M9 183 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 SLC5A8Q8N695 610 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 C2orf15Q8WU43 125 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 RBPMSQ93062 196 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 SLC39A13Q96H72 371 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 FUBP3Q96I24 572 aaKnown RBP eCLIP8.55□□□□□ -1.04
VCL-206ENST00000623461 EMC7Q9NPA0 242 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 EMCNQ9ULC0 261 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 ANKRD12Q6UB98 2062 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 LAMB1P07942 1786 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 MEN1O00255 615 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 NRP1O14786 923 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 SYN3O14994 580 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 SPDEFO95238 335 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 IFNA1P01562 189 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 THEGLP0DJG4 465 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 RPS2P15880 293 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 TAS2R50P59544 299 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 ZNF33BQ06732 778 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 PTCHD3Q3KNS1 767 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 ZNF529Q6P280 563 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 CHRDL2Q6WN34 429 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 MYOCQ99972 504 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 MFFQ9GZY8 342 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 PHPT1Q9NRX4 125 aaPredicted RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 TMEM248Q9NWD8 314 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 FCF1Q9Y324 198 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 CLDN4O14493 209 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 OIP5O43482 229 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 PPP3CBP16298 524 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 RAB3AP20336 220 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 IDSP22304 550 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 MLLT11Q13015 90 aaPredicted RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 TARBP2Q15633 366 aaKnown RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 C15orf39Q6ZRI6 1047 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 LARP4Q71RC2 724 aaKnown RBP eCLIP8.55□□□□□ -1.04
VCL-206ENST00000623461 NUP54Q7Z3B4 507 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 C2orf73Q8N5S3 287 aaPredicted RBP8.55□□□□□ -1.04
VCL-206ENST00000623461 ANGPTL6Q8NI99 470 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 TTPALQ9BTX7 342 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 OSER1Q9NX31 292 aa8.55□□□□□ -1.04
VCL-206ENST00000623461 ANKRD66B4E2M5 251 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 H3BUI4 141 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 FGF19O95750 216 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 WDPCPO95876 746 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PDYNP01213 254 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 SHMT2P34897 504 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PRAMEF14Q5SWL7 426 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 AKR1C8PQ5T2L2 129 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 ZNF101Q8IZC7 436 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 LILRA2Q8N149 483 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 WDTC1Q8N5D0 677 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 OR2L8Q8NGY9 312 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 ZDHHC1Q8WTX9 485 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 CLIP3Q96DZ5 547 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PSD2Q9BQI7 771 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 HERPUD2Q9BSE4 406 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 TAPBPLQ9BX59 468 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 GSTO2Q9H4Y5 243 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 WASH6PQ9NQA3 447 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 FBXO10Q9UK96 956 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 RAB19A4D1S5 217 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 CACNB4O00305 520 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 ATP1B2P14415 290 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 AMD1P17707 334 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 GDF5P43026 501 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 TLE2Q04725 743 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 SLC10A2Q12908 348 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 ABRAXAS2Q15018 415 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 SLX4IPQ5VYV7 408 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 TCEAL6Q6IPX3 200 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 LRRC28Q86X40 367 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 CPNE2Q96FN4 548 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 SNED1Q8TER0 1413 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 FMO6PO60774 539 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 ZNF821O75541 412 aaPredicted RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 CLCNKBP51801 687 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 RPS13P62277 151 aaKnown RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 TOR1AIP1Q5JTV8 583 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PLEKHS1Q5SXH7 462 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 ASAH2Q9NR71 780 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 GFOD1Q9NXC2 390 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PTGDR2Q9Y5Y4 395 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 PSMD9O00233 223 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 TFPIP10646 304 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 TPT1P13693 172 aaKnown RBP8.54□□□□□ -1.04
VCL-206ENST00000623461 CTSEP14091 401 aa8.54□□□□□ -1.04
VCL-206ENST00000623461 FLI1Q01543 452 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms