RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 SCARB1Q8WTV0 552 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ELMOD3Q96FG2 381 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SCMH1Q96GD3 660 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZBED3Q96IU2 234 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 HIST1H2AHQ96KK5 128 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 HIST1H2AJQ99878 128 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 TCEAL7Q9BRU2 100 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 TAPBPLQ9BX59 468 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CDCA4Q9BXL8 241 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SEMA4CQ9C0C4 833 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PPP1R3EQ9H7J1 279 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PXMP2Q9NR77 195 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 C1orf109Q9NX04 203 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 KLHL9Q9P2J3 617 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PLEKHB1Q9UF11 243 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 C7orf66A4D0T2 115 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ZNF729A6NN14 1252 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 SGK494L7N484 410 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 GPR171O14626 319 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 GADD45GO95257 159 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SIX6O95475 246 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 KLK3P07288 261 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 FBP1P09467 338 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 RD3LP0DJH9 198 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CBR1P16152 277 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CYP2B6P20813 491 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PBX3P40426 434 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CRYBB2P43320 205 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SERTAD2Q14140 314 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SMCO1Q147U7 214 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 NR6A1Q15406 480 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ZSWIM7Q19AV6 140 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ZNF628Q5EBL2 1059 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 FAM171A1Q5VUB5 890 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PRAMEF13Q5VWM6 474 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 RBMS3Q6XE24 437 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 PDZD3Q86UT5 571 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CNTN4Q8IWV2 1026 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PHACTR4Q8IZ21 702 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 DENND6BQ8NEG7 585 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 GLYATL2Q8WU03 294 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 EDARADDQ8WWZ3 215 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PABPC5Q96DU9 382 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 TMEM176AQ96HP8 235 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 BBS4Q96RK4 519 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 YIPF4Q9BSR8 244 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ABCG5Q9H222 651 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 BTNL2Q9UIR0 455 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 DNAH12Q6ZR08 3092 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 LOXHD1Q8IVV2 1947 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PDE4DIPQ5VU43 2346 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 MEIKINA0A087WXM9 373 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ANXA2P2A6NMY6 339 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 DISC1C4P0D8 188 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ALDOBP05062 364 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PAICSP22234 425 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 SLC6A1P30531 599 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 MMP12P39900 470 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 MRPL19P49406 292 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 RIDAP52758 137 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 BACE1P56817 501 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SNRPEP62304 92 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 LCP2Q13094 533 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ALKBH1Q13686 389 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 SEC23BQ15437 767 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SPHARQ15513 63 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 EXOC3L2Q2M3D2 409 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 C9orf152Q5JTZ5 239 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 TCTE1Q5JU00 501 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 KRBOX4Q5JUW0 171 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 FAM74A1Q5RGS3 127 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 C22orf42Q6IC83 251 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SPAG16Q8N0X2 631 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ATPAF2Q8N5M1 289 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SETD7Q8WTS6 366 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 CENPIQ92674 756 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 KCNJ9Q92806 393 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 TSNAXQ99598 290 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 NTMT1Q9BV86 223 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 NLNQ9BYT8 704 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 POLR2J2Q9GZM3 115 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 HAPLN2Q9GZV7 340 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 KCNH6Q9H252 994 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 DPAGT1Q9H3H5 408 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PRMT7Q9NVM4 692 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 CDV3Q9UKY7 258 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 EXO1Q9UQ84 846 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 STYXL1Q9Y6J8 313 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SOWAHBA6NEL2 793 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 OR6C75A6NL08 312 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 KERAO60938 352 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PAGE1O75459 146 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 GLUD1P00367 558 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ZDHHC11BP0C7U3 371 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PRG2P13727 222 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ENGP17813 658 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 IL1RNP18510 177 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 NFKB1P19838 968 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 POU3F2P20265 443 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 ITGB7P26010 798 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms