RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GATA6Q92908 595 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 AGPAT4Q9NRZ5 378 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 P2RX2Q9UBL9 471 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 PDGFBP01127 241 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-213ENST00000620219 ITGA2P17301 1181 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 KHKP50053 298 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 REEP3Q6NUK4 255 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 GPR153Q6NV75 609 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 ABHD11Q8NFV4 315 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.9□□□□□ -0.022e-12■■□□□ 13.5
CPSF1-213ENST00000620219 CXorf36Q9H7Y0 433 aa14.9□□□□□ -0.02
CPSF1-213ENST00000620219 DRD2P14416 443 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 RGS8P57771 180 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 MLIPQ5VWP3 458 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 FRMPD2BQ6IN97 320 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 FAM71E1Q6IPT2 247 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 ZC3H14Q6PJT7 736 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 TMEM19Q96HH6 336 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 TEFMQ96QE5 360 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 SPATA5L1Q9BVQ7 753 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 FANCEQ9HB96 536 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 ARMC1Q9NVT9 282 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 KLF15Q9UIH9 416 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 BTNL2Q9UIR0 455 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 CCNYL3P0C7X3 344 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 AHRP35869 848 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 OR1D5P58170 312 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 LTB4RQ15722 352 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 RBM44Q6ZP01 1051 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 SHISA6Q6ZSJ9 500 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 ATOH1Q92858 354 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 MS4A6EQ96DS6 147 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 NDC1Q9BTX1 674 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 MAT2BQ9NZL9 334 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 DUX1O43812 170 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 HMGN2P05204 90 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 ACPPP15309 386 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 TAS2R41P59536 307 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 RAE1P78406 368 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 KCNAB1Q14722 419 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 TTC23Q5W5X9 447 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 IKBIPQ70UQ0 350 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 SLC22A18ASQ8N1D0 253 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 MFSD9Q8NBP5 474 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 OR52N2Q8NGI0 321 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 UCN3Q969E3 161 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 NRBF2Q96F24 287 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 PLEKHA8Q96JA3 519 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 PNPLA3Q9NST1 481 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 LYARQ9NX58 379 aaKnown RBP14.89□□□□□ -0.03
CPSF1-213ENST00000620219 MKLN1Q9UL63 735 aa14.89□□□□□ -0.03
CPSF1-213ENST00000620219 FAM227AF5H4B4 570 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 SLC16A1P53985 500 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 DMPKQ09013 629 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ZNF630Q2M218 657 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 PATL1Q86TB9 770 aaKnown RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 DCP2Q8IU60 420 aaKnown RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 GAL3ST3Q96A11 431 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 SLC52A3Q9NQ40 469 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 BLOC1S6Q9UL45 172 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ARID1BQ8NFD5 2236 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 KRT20P35900 424 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 NUDT1P36639 197 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ARSFP54793 590 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 GFERP55789 205 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 DAG1Q14118 895 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 GNA13Q14344 377 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 TBPL2Q6SJ96 375 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 HIPK1Q86Z02 1210 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 METTL2AQ96IZ6 378 aaKnown RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 PTCHD1Q96NR3 888 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 SCN3BQ9NY72 215 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 AP3D1O14617 1153 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 MAN1A2O60476 641 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 KLHL18O94889 574 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ATP6AP1Q15904 470 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ARHGAP40Q5TG30 622 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 LRRC25Q8N386 305 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 NACC2Q96BF6 587 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 OR8D2Q9GZM6 311 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 TMEM150CB9EJG8 249 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 GADD45GO95257 159 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 BMP2P12643 396 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 TEAD1P28347 426 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 LIN52Q52LA3 116 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ADGRF3Q8IZF5 1079 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 MTERF3Q96E29 417 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 CCDC115Q96NT0 180 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 RBM4BQ9BQ04 359 aaKnown RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 RBM4Q9BWF3 364 aaKnown RBP14.88□□□□□ -0.03
CPSF1-213ENST00000620219 AMBNQ9NP70 447 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 UCKL1Q9NWZ5 548 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 AASSQ9UDR5 926 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 ST14Q9Y5Y6 855 aa14.88□□□□□ -0.03
CPSF1-213ENST00000620219 OR5K3A6NET4 321 aa14.87□□□□□ -0.03
CPSF1-213ENST00000620219 OR2W5A6NFC9 320 aa14.87□□□□□ -0.03
CPSF1-213ENST00000620219 GNB5O14775 395 aa14.87□□□□□ -0.03
CPSF1-213ENST00000620219 UGT2B17O75795 530 aa14.87□□□□□ -0.03
CPSF1-213ENST00000620219 MUS81Q96NY9 551 aa14.87□□□□□ -0.03
CPSF1-213ENST00000620219 DCUN1D5Q9BTE7 237 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms