RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TNNI1P19237 187 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TRIM21P19474 475 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CPT2P23786 658 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 RFC1P35251 1148 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CCNHP51946 323 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CSE1LP55060 971 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 GSDMDP57764 484 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 POLR2FP61218 127 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PMP22Q01453 160 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 C17orf67Q0P5P2 114 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CAMK2DQ13557 499 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 STIM1Q13586 685 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PEX6Q13608 980 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 FHL3Q13643 280 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 NCF4Q15080 339 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF699Q32M78 642 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 MYLK3Q32MK0 819 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 P3H1Q32P28 736 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 ANKDD1AQ495B1 522 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 FILIP1LQ4L180 1135 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SLC9B1Q4ZJI4 515 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 KRBOX4Q5JUW0 171 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 FAM198BQ6UWH4 519 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 RRM2BQ7LG56 351 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PIGZQ86VD9 579 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 GPBP1Q86WP2 473 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CBWD2Q8IUF1 395 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CCDC71Q8IV32 467 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TUSC5Q8IXB3 177 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 OR4N4Q8N0Y3 316 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 EID3Q8N140 333 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 GPD1LQ8N335 351 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SIDT2Q8NBJ9 832 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SLC38A9Q8NBW4 561 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM116Q8NCL8 245 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 ANKRD20A12PQ8NF67 263 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SYAP1Q96A49 352 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SAT2Q96F10 170 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 RBM18Q96H35 190 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 RUNDC3BQ96NL0 473 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 THAP9Q9H5L6 903 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 MRPL44Q9H9J2 332 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SNTG1Q9NSN8 517 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 HOOK1Q9UJC3 728 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PPIEQ9UNP9 301 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 LIPT1Q9Y234 373 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 OR51B4Q9Y5P0 310 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SESN1Q9Y6P5 492 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TRAV34A0A0B4J273 112 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 GXYLT2A0PJZ3 443 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 KRT87PA6NCN2 255 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF233A6NK53 670 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 A8MZ25 164 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 TOX3O15405 576 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF821O75541 412 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 EML2O95834 649 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 TSPAN12O95859 305 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 FTCDO95954 541 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 F10P00742 488 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 FYNP06241 537 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ABCB1P08183 1280 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ACP5P13686 325 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 RPS2P15880 293 aaKnown RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 NELFEP18615 380 aaKnown RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 TNFRSF1BP20333 461 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 IL10P22301 178 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PRKAR1BP31321 381 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 CPOXP36551 454 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SLC15A1P46059 708 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 GSTM5P46439 218 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 HMGN5P82970 282 aaKnown RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SCN1BQ07699 218 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 CCNIQ14094 377 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 TYSND1Q2T9J0 566 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 C15orf59Q2T9L4 293 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PTCHD3Q3KNS1 767 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 CARD16Q5EG05 197 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PM20D1Q6GTS8 502 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 KIAA0930Q6ICG6 404 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ISLR2Q6UXK2 745 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 FAM92BQ6ZTR7 304 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 MSANTD1Q6ZTZ1 278 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 UNC93AQ86WB7 457 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 MEX3DQ86XN8 651 aaKnown RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ARHGAP12Q8IWW6 846 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SYCP3Q8IZU3 236 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 DSELQ8IZU8 1212 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SFRP1Q8N474 314 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 MARVELD2Q8N4S9 558 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 OTUD6BQ8N6M0 293 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 DUSP19Q8WTR2 217 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 IGFBPL1Q8WX77 278 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 KLHL29Q96CT2 875 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 CFAP57Q96MR6 1250 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 GPR137Q96N19 417 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PSMB7Q99436 277 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 NAA11Q9BSU3 229 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SPXQ9BT56 116 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 MMTAG2Q9BU76 263 aaKnown RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms